Tripartite species interaction: eukaryotic hosts suffer more from phage susceptible than from phage resistant bacteria

[1]  Chloe E. James,et al.  The role of temperate bacteriophages in bacterial infection. , 2016, FEMS microbiology letters.

[2]  S. Parratt,et al.  The role of hyperparasitism in microbial pathogen ecology and evolution , 2016, The ISME Journal.

[3]  D. McDougald,et al.  'Big things in small packages: the genetics of filamentous phage and effects on fitness of their host'. , 2015, FEMS microbiology reviews.

[4]  Matthew R. Laird,et al.  IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis , 2015, Nucleic Acids Res..

[5]  Roberto Bastías,et al.  Virulence reduction in bacteriophage resistant bacteria , 2015, Front. Microbiol..

[6]  T. Ilyina.  Filamentous bacteriophages and their role in the virulence and evolution of pathogenic bacteria , 2015, Molecular Genetics, Microbiology and Virology.

[7]  Hywel T. P. Williams,et al.  FALCON: a software package for analysis of nestedness in bipartite networks , 2014, F1000Research.

[8]  Torsten Seemann,et al.  Prokka: rapid prokaryotic genome annotation , 2014, Bioinform..

[9]  K. M. Wegner,et al.  Persistence, Seasonal Dynamics and Pathogenic Potential of Vibrio Communities from Pacific Oyster Hemolymph , 2014, PloS one.

[10]  K. M. Wegner,et al.  Relative contribution of reproductive investment, thermal stress and Vibrio infection to summer mortality phenomena in Pacific oysters , 2013 .

[11]  Z. Hosseinidoust,et al.  Evolution of Pseudomonas aeruginosa Virulence as a Result of Phage Predation , 2013, Applied and Environmental Microbiology.

[12]  Z. Hosseinidoust,et al.  Predation in Homogeneous and Heterogeneous Phage Environments Affects Virulence Determinants of Pseudomonas aeruginosa , 2013, Applied and Environmental Microbiology.

[13]  Sergi Valverde,et al.  Phage-bacteria infection networks. , 2013, Trends in microbiology.

[14]  J. Laakso,et al.  Phage-Driven Loss of Virulence in a Fish Pathogenic Bacterium , 2012, PloS one.

[15]  W. Salzburger,et al.  HOSTS ARE AHEAD IN A MARINE HOST–PARASITE COEVOLUTIONARY ARMS RACE: INNATE IMMUNE SYSTEM ADAPTATION IN PIPEFISH SYNGNATHUS TYPHLE AGAINST VIBRIO PHYLOTYPES , 2012, Evolution; international journal of organic evolution.

[16]  D. Rasko,et al.  Phylomark, a Tool To Identify Conserved Phylogenetic Markers from Whole-Genome Alignments , 2012, Applied and Environmental Microbiology.

[17]  Takashi Yamada,et al.  Loss of virulence of the phytopathogen Ralstonia solanacearum through infection by φRSM filamentous phages. , 2012, Phytopathology.

[18]  Maxim Teslenko,et al.  MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space , 2012, Systematic biology.

[19]  Jeffrey E. Barrick,et al.  Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda , 2012, Science.

[20]  S. Valverde,et al.  Statistical structure of host–phage interactions , 2011, Proceedings of the National Academy of Sciences.

[21]  C. Goodnight.  Evolution in metacommunities , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

[22]  D. Refardt.  Within-host competition determines reproductive success of temperate bacteriophages , 2011, The ISME Journal.

[23]  Zixin Deng,et al.  TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea , 2010, Nucleic Acids Res..

[24]  Paramvir S. Dehal,et al.  FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.

[25]  J. Balcázar,et al.  Isolation of Vibrio alginolyticus and Vibrio splendidus from captive-bred seahorses with disease symptoms , 2010, Antonie van Leeuwenhoek.

[26]  R. Barrangou,et al.  CRISPR/Cas, the Immune System of Bacteria and Archaea , 2010, Science.

[27]  F. Rohwer,et al.  Viruses manipulate the marine environment , 2009, Nature.

[28]  Michal Linial,et al.  ClanTox: a classifier of short animal toxins , 2009, Nucleic Acids Res..

[29]  Tetsuya Hayashi,et al.  The Defective Prophage Pool of Escherichia coli O157: Prophage–Prophage Interactions Potentiate Horizontal Transfer of Virulence Determinants , 2009, PLoS pathogens.

[30]  Chuan-Hsiung Chang,et al.  Characterization of a New Plasmid-Like Prophage in a Pandemic Vibrio parahaemolyticus O3:K6 Strain , 2009, Applied and Environmental Microbiology.

[31]  J. Paul.  Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas? , 2008, The ISME Journal.

[32]  C. Suttle.  Marine viruses — major players in the global ecosystem , 2007, Nature Reviews Microbiology.

[33]  Anne-Béatrice Dufour,et al.  The ade4 Package: Implementing the Duality Diagram for Ecologists , 2007 .

[34]  Sylvain Gandon,et al.  The Evolution of Specificity in Evolving and Coevolving Antagonistic Interactions Between a Bacteria and its Phage , 2007, Evolution; international journal of organic evolution.

[35]  G. Mortier,et al.  qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data , 2007, Genome Biology.

[36]  X. Nassif,et al.  Bacteriophages and pathogenicity: more than just providing a toxin? , 2006, Microbes and infection.

[37]  C. Suttle.  Viruses in the sea , 2005, Nature.

[38]  D. Dryden,et al.  The biology of restriction and anti-restriction. , 2005, Current opinion in microbiology.

[39]  S. Yamasaki,et al.  Genomic Sequence and Receptor for the Vibrio cholerae Phage KSF-1Φ: Evolutionary Divergence among Filamentous Vibriophages Mediating Lateral Gene Transfer , 2005, Journal of bacteriology.

[40]  Anindito Sen,et al.  Physicochemical characterization of vibriophage N5 , 2005, Virology Journal.

[41]  Rebecca E. Irwin,et al.  Ecological and Evolutionary Consequences of Multispecies Plant-Animal Interactions , 2004 .

[42]  D. Posada,et al.  Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. , 2004, Systematic biology.

[43]  Ghislain Fournous,et al.  The impact of prophages on bacterial chromosomes , 2004, Molecular microbiology.

[44]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[45]  M. Stanton.  Interacting Guilds: Moving beyond the Pairwise Perspective on Mutualisms , 2003, The American Naturalist.

[46]  S. Casjens,et al.  Prophages and bacterial genomics: what have we learned so far? , 2003, Molecular microbiology.

[47]  Matthew K. Waldor,et al.  Bacteriophage Control of Bacterial Virulence , 2002, Infection and Immunity.

[48]  John P. Huelsenbeck,et al.  MRBAYES: Bayesian inference of phylogenetic trees , 2001, Bioinform..

[49]  E. Alcaide,et al.  Vibrio harveyi causes disease in seahorse, Hippocampus sp. , 2001 .

[50]  Matthew K. Waldor,et al.  Lysogenic Conversion by a Filamentous Phage Encoding Cholera Toxin , 1996, Science.

[51]  Jed A. Fuhrman,et al.  Viral mortality of marine bacteria and cyanobacteria , 1990, Nature.

[52]  G. Bratbak,et al.  High abundance of viruses found in aquatic environments , 1989, Nature.

[53]  G. Meynell,et al.  “Induction” of Colicin Factor E2-P9 by Mitomycin C , 1972, Journal of bacteriology.

[54]  D. Helinski,et al.  Comparative Study of the Events Associated with Colicin Induction , 1967, Journal of bacteriology.

[55]  S. Luria,et al.  Mutations of Bacterial Viruses Affecting Their Host Range. , 1945, Genetics.

[56]  O. Roth,et al.  iparental immune priming in the pipefish Syngnathus typhle , 2016 .

[57]  Mya Breitbart,et al.  Marine viruses: truth or dare. , 2012, Annual review of marine science.

[58]  M. Russel,et al.  Filamentous bacteriophage: biology, phage display and nanotechnology applications. , 2011, Current issues in molecular biology.

[59]  Carsten F. Dormann,et al.  Introducing the bipartite Package: Analysing Ecological Networks , 2008 .

[60]  Peer Bork,et al.  Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation , 2007, Bioinform..

[61]  S. Luf.  MUTATIONS OF BACTERIAL VIRUSES AFFECTING THEIR HOST RANGE 1 , 2005 .