How to correctly quantify neuronal phase-response curves from noisy recordings

At the level of individual neurons, various coding properties can be inferred from the input-output relationship of a cell. For small inputs, this relation is captured by the phase-response curve (PRC), which measures the effect of a small perturbation on the timing of the subsequent spike. Experimentally, however, an accurate experimental estimation of PRCs is challenging. Despite elaborate measurement efforts, experimental PRC estimates often cannot be related to those from modeling studies. In particular, experimental PRCs rarely resemble the characteristic theoretical PRC expected close to spike initiation, which is indicative of the underlying spike-onset bifurcation. Here, we show for conductance-based model neurons that the correspondence between theoretical and measured phase-response curve is lost when the stimuli used for the estimation are too large. In this case, the derived phase-response curve is distorted beyond recognition and takes on a generic shape that reflects the measurement protocol and masks the spike-onset bifurcation. We discuss how to identify appropriate stimulus strengths for perturbation and noise-stimulation methods, which permit to estimate PRCs that reliably reflect the spike-onset bifurcation – a task that is particularly difficult if a lower bound for the stimulus amplitude is dictated by prominent intrinsic neuronal noise.

[1]  Klaus M. Stiefel,et al.  A novel method for determining the phase-response curves of neurons based on minimizing spike-time prediction error , 2010 .

[2]  A. Alonso,et al.  Noise from voltage-gated ion channels may influence neuronal dynamics in the entorhinal cortex. , 1998, Journal of neurophysiology.

[3]  Michael A. Schwemmer,et al.  Experimentally Estimating Phase Response Curves of Neurons: Theoretical and Practical Issues , 2012 .

[4]  Charles J. Wilson,et al.  Response properties and synchronization of rhythmically firing dendritic neurons. , 2007, Journal of neurophysiology.

[5]  Robert J. Butera,et al.  Comprar Phase Response Curves In Neuroscience. Theory, Experiment And Analysis (Springer Series In Computational Neuroscience, Vol. 6) | Robert J. Butera | 9781461407386 | Springer , 2012 .

[6]  Toshio Aoyagi,et al.  Weighted spike-triggered average of a fluctuating stimulus yielding the phase response curve. , 2008, Physical review letters.

[7]  Sven Blankenburg,et al.  Information filtering in resonant neurons , 2015, Journal of Computational Neuroscience.

[8]  Christof Koch,et al.  Detecting and Estimating Signals in Noisy Cable Structures, II: Information Theoretical Analysis , 1999, Neural Computation.

[9]  G Bard Ermentrout,et al.  Phase-response curves and synchronized neural networks , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.

[10]  David Terman,et al.  Mathematical foundations of neuroscience , 2010 .

[11]  Martin Stemmler,et al.  Coding of information in limit cycle oscillators. , 2009, Physical review letters.

[12]  Germán Mato,et al.  Synchrony in Excitatory Neural Networks , 1995, Neural Computation.

[13]  G Bard Ermentrout,et al.  Efficient estimation of phase-resetting curves in real neurons and its significance for neural-network modeling. , 2005, Physical review letters.

[14]  G. Ermentrout,et al.  Phase-response curves give the responses of neurons to transient inputs. , 2005, Journal of neurophysiology.

[15]  Charles J. Wilson,et al.  Phase response curves of subthalamic neurons measured with synaptic input and current injection. , 2012, Journal of neurophysiology.

[16]  G. Ermentrout,et al.  Reliability, synchrony and noise , 2008, Trends in Neurosciences.

[17]  Eric Shea-Brown,et al.  On the Phase Reduction and Response Dynamics of Neural Oscillator Populations , 2004, Neural Computation.

[18]  Rajesh P. N. Rao,et al.  Frequency dependence of spike timing reliability in cortical pyramidal cells and interneurons. , 2001, Journal of neurophysiology.

[19]  G. Ermentrout,et al.  Analysis of neural excitability and oscillations , 1989 .

[20]  Yoshiki Kuramoto,et al.  Chemical Oscillations, Waves, and Turbulence , 1984, Springer Series in Synergetics.

[21]  T. Sejnowski,et al.  Reliability of spike timing in neocortical neurons. , 1995, Science.

[22]  Susanne Schreiber,et al.  Qualitative changes in phase-response curve and synchronization at the saddle-node-loop bifurcation. , 2017, Physical review. E.

[23]  G. Ermentrout,et al.  Neurons as oscillators. , 2016, Journal of neurophysiology.

[24]  Romain Brette,et al.  Equation-oriented specification of neural models for simulations , 2013, Front. Neuroinform..

[25]  Bard Ermentrout,et al.  When inhibition not excitation synchronizes neural firing , 1994, Journal of Computational Neuroscience.

[26]  A. Reyes,et al.  Layer and frequency dependencies of phase response properties of pyramidal neurons in rat motor cortex , 2007, The European journal of neuroscience.

[27]  G. Buzsáki,et al.  Gamma Oscillation by Synaptic Inhibition in a Hippocampal Interneuronal Network Model , 1996, The Journal of Neuroscience.

[28]  Eugene M. Izhikevich,et al.  Neural excitability, Spiking and bursting , 2000, Int. J. Bifurc. Chaos.

[29]  Inés Samengo,et al.  Two distinct mechanisms shape the reliability of neural responses. , 2009, Journal of neurophysiology.

[30]  D. Kullmann,et al.  Analogue closed-loop optogenetic modulation of hippocampal pyramidal cells dissociates gamma frequency and amplitude , 2018, eLife.

[31]  Robert J. Butera,et al.  Synaptic and intrinsic determinants of the phase resetting curve for weak coupling , 2011, Journal of Computational Neuroscience.

[32]  A. Reyes,et al.  Effects of transient depolarizing potentials on the firing rate of cat neocortical neurons. , 1993, Journal of neurophysiology.

[33]  Tomoki Fukai,et al.  Temporal precision of spike response to fluctuating input in pulse-coupled networks of oscillating neurons. , 2008, Physical review letters.

[34]  Hermann Cuntz,et al.  A New Approach for Determining Phase Response Curves Reveals that Purkinje Cells Can Act as Perfect Integrators , 2010, PLoS Comput. Biol..

[36]  A. Hodgkin,et al.  A quantitative description of membrane current and its application to conduction and excitation in nerve , 1990 .

[37]  Charles J. Wilson,et al.  Biophysical basis of the phase response curve of subthalamic neurons with generalization to other cell types. , 2012, Journal of neurophysiology.

[38]  W. Govaerts,et al.  Computation of the Phase Response Curve: A Direct Numerical Approach , 2006, Neural Computation.

[39]  Y. B. Wah,et al.  Power comparisons of Shapiro-Wilk , Kolmogorov-Smirnov , Lilliefors and Anderson-Darling tests , 2011 .

[40]  D. Kullmann,et al.  Oscillatory dynamics in the hippocampus support dentate gyrus–CA3 coupling , 2012, Nature Neuroscience.

[41]  Bard Ermentrout,et al.  Type I Membranes, Phase Resetting Curves, and Synchrony , 1996, Neural Computation.

[42]  John A. White,et al.  Beyond Two-Cell Networks: Experimental Measurement of Neuronal Responses to Multiple Synaptic Inputs , 2005, Journal of Computational Neuroscience.

[43]  Carmen C Canavier,et al.  Hippocampal CA1 pyramidal neurons exhibit type 1 phase-response curves and type 1 excitability. , 2013, Journal of neurophysiology.

[44]  L. Glass,et al.  Phase locking, period-doubling bifurcations, and irregular dynamics in periodically stimulated cardiac cells. , 1981, Science.

[45]  Benjamin Torben-Nielsen,et al.  A Comparison of Methods to Determine Neuronal Phase-Response Curves , 2010, Front. Neuroinform..

[46]  A. Reyes,et al.  Two modes of interspike interval shortening by brief transient depolarizations in cat neocortical neurons. , 1993, Journal of neurophysiology.

[47]  Christof Koch,et al.  Intrinsic Noise in Cultured Hippocampal Neurons: Experiment and Modeling , 2004, The Journal of Neuroscience.

[48]  G. Ermentrout,et al.  Multiple pulse interactions and averaging in systems of coupled neural oscillators , 1991 .

[49]  Aurel A. Lazar,et al.  Information representation with an ensemble of Hodgkin-Huxley neurons , 2007, Neurocomputing.

[50]  Eugene M. Izhikevich,et al.  Dynamical Systems in Neuroscience: The Geometry of Excitability and Bursting , 2006 .

[51]  Anna Wirz-Justice,et al.  A human phase-response curve to light , 1991, Neuroscience Letters.

[52]  Corey D. Acker,et al.  Synchronization in hybrid neuronal networks of the hippocampal formation. , 2005, Journal of neurophysiology.