A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications
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[1] Nicoletta Archidiacono,et al. Ancestral genomes reconstruction: an integrated, multi-disciplinary approach is needed. , 2006, Genome research.
[2] Dannie Durand,et al. NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees , 2000, J. Comput. Biol..
[3] Oliver Eulenstein,et al. Heuristics for the Gene-Duplication Problem: A Theta ( n ) Speed-Up for the Local Search , 2007, RECOMB.
[4] D. Sankoff,et al. Duplication, Rearrangement, and Reconciliation , 2000 .
[5] Fengtang Yang,et al. Are molecular cytogenetics and bioinformatics suggesting diverging models of ancestral mammalian genomes? , 2006, Genome research.
[6] R. Guigó,et al. Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia , 2006, Nature.
[7] Krister M. Swenson,et al. Genomic Distances under Deletions and Insertions , 2004, Theor. Comput. Sci..
[8] David Sankoff,et al. Multiple Genome Rearrangement and Breakpoint Phylogeny , 1998, J. Comput. Biol..
[9] James F. Gimpel,et al. Covering Points of a Digraph with Point-Disjoint Paths and Its Application to Code Optimization , 1977, JACM.
[10] K. H. Wolfe,et al. Extent of genomic rearrangement after genome duplication in yeast. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[11] Temple F. Smith,et al. Reconstruction of ancient molecular phylogeny. , 1996, Molecular phylogenetics and evolution.
[12] Bernard B. Suh,et al. Reconstructing contiguous regions of an ancestral genome. , 2006, Genome research.
[13] R. Page,et al. From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem. , 1997, Molecular phylogenetics and evolution.
[14] D. Sankoff,et al. Comparative Genomics: "Empirical And Analytical Approaches To Gene Order Dynamics, Map Alignment And The Evolution Of Gene Families" , 2000 .
[15] P. Pevzner,et al. Genome-scale evolution: reconstructing gene orders in the ancestral species. , 2002, Genome research.
[16] E. Eichler,et al. Structural Dynamics of Eukaryotic Chromosome Evolution , 2003, Science.
[17] J. G. Burleigh,et al. Heuristics for the Gene-duplication Problem : A Θ ( n ) Speed-up for the Local Search , 2007 .
[18] G. Moore,et al. Fitting the gene lineage into its species lineage , 1979 .
[19] David Sankoff,et al. The Reconstruction of Doubled Genomes , 2003, SIAM J. Comput..
[20] Ron Shamir,et al. The median problems for breakpoints are NP-complete , 1998, Electron. Colloquium Comput. Complex..
[21] David Sankoff,et al. Genome rearrangement with gene families , 1999, Bioinform..
[22] P. Pevzner,et al. The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction. , 2006, Genome research.
[23] W. Fitch. Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology , 1971 .
[24] David A. Bader,et al. A New Implmentation and Detailed Study of Breakpoint Analysis , 2000, Pacific Symposium on Biocomputing.
[25] David Sankoff,et al. Genome Halving with an Outgroup , 2006 .
[26] Pavel A. Pevzner,et al. Whole Genome Duplications and Contracted Breakpoint Graphs , 2007, SIAM J. Comput..
[27] Alberto Caprara,et al. Formulations and hardness of multiple sorting by reversals , 1999, RECOMB.