Genetic, Phenotypic and Metabolic Diversity of Yeasts From Wheat Flag Leaves

The phyllosphere, the aboveground part of a plant, is a harsh environment with diverse abiotic and biotic stresses, including oscillating nutrient availability and temperature as well as exposure to UV radiation. Microbial colonization of this dynamic environment requires specific adaptive traits, including tolerance to fluctuating temperatures, the production of secondary metabolites and pigments to successfully compete with other microorganisms and to withstand abiotic stresses. Here, we isolated 175 yeasts, comprising 15 different genera, from the wheat flag leaf and characterized a selection of these for various adaptive traits such as substrate utilization, tolerance to different temperatures, biofilm formation, and antagonism toward the fungal leaf pathogen Fusarium graminearum. Collectively our results revealed that the wheat flag leaf is a rich resource of taxonomically and phenotypically diverse yeast genera that exhibit various traits that can contribute to survival in the harsh phyllosphere environment.

[1]  T. Gabaldón,et al.  Trends in yeast diversity discovery , 2021, Fungal Diversity.

[2]  S. Casaregola,et al.  Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes , 2021, IMA Fungus.

[3]  J. Koskimäki,et al.  Host species shape the community structure of culturable endophytes in fruits of wild berry species (Vaccinium myrtillus L., Empetrum nigrum L. and Vaccinium vitis-idaea L.) , 2021, FEMS microbiology ecology.

[4]  V. Vujanovic Tremellomycetes Yeasts in Kernel Ecological Niche: Early Indicators of Enhanced Competitiveness of Endophytic and Mycoparasitic Symbionts against Wheat Pathobiota , 2021, Plants.

[5]  T. Mauchline,et al.  Defining the wheat microbiome: Towards microbiome-facilitated crop production , 2021, Computational and structural biotechnology journal.

[6]  Md. Arshad Ali,et al.  Functional Analysis and Genome Mining Reveal High Potential of Biocontrol and Plant Growth Promotion in Nodule-Inhabiting Bacteria Within Paenibacillus polymyxa Complex , 2021, Frontiers in Microbiology.

[7]  R. Samson,et al.  Modes of Action of Microbial Biocontrol in the Phyllosphere , 2020, Frontiers in Microbiology.

[8]  M. Di Foggia,et al.  Biocontrol Activity and Plant Growth Promotion Exerted by Aureobasidium pullulans Strains , 2020, Journal of Plant Growth Regulation.

[9]  M. Sipiczki Metschnikowia pulcherrima and Related Pulcherrimin-Producing Yeasts: Fuzzy Species Boundaries and Complex Antimicrobial Antagonism , 2020, Microorganisms.

[10]  F. Bordet,et al.  Yeast–Yeast Interactions: Mechanisms, Methodologies and Impact on Composition , 2020, Microorganisms.

[11]  J. Gambetta,et al.  Aureobasidium pullulans volatilome identified by a novel, quantitative approach employing SPME-GC-MS, suppressed Botrytis cinerea and Alternaria alternata in vitro , 2020, Scientific Reports.

[12]  A. Cao,et al.  Scent of a Killer: Microbial Volatilome and Its Role in the Biological Control of Plant Pathogens , 2020, Frontiers in Microbiology.

[13]  Andrey M. Yurkov,et al.  Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species , 2020, Studies in mycology.

[14]  Bruno Tilocca,et al.  Biocontrol yeasts: mechanisms and applications , 2019, World Journal of Microbiology and Biotechnology.

[15]  U. Gašić,et al.  Phyllosphere Fungal Communities of Plum and Antifungal Activity of Indigenous Phenazine-Producing Pseudomonas synxantha Against Monilinia laxa , 2019, Front. Microbiol..

[16]  Lucia Parafati,et al.  Volatile organic compounds (VOCs) produced by biocontrol yeasts. , 2019, Food microbiology.

[17]  K. H. Wolfe,et al.  Snf2 controls pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast Metschnikowia pulcherrima , 2019, Molecular microbiology.

[18]  M. Nicolaisen,et al.  Fungicides have complex effects on the wheat phyllosphere mycobiome , 2019, PloS one.

[19]  Andrey M. Yurkov,et al.  Extremophilic yeasts: the toughest yeasts around? , 2018, Yeast.

[20]  L. Váchová,et al.  How structured yeast multicellular communities live, age and die? , 2018, FEMS yeast research.

[21]  L. Oro,et al.  Volatile organic compounds from Wickerhamomyces anomalus, Metschnikowia pulcherrima and Saccharomyces cerevisiae inhibit growth of decay causing fungi and control postharvest diseases of strawberries. , 2018, International journal of food microbiology.

[22]  Yang Tian,et al.  The preservation effect of Metschnikowia pulcherrima yeast on anthracnose of postharvest mango fruits and the possible mechanism , 2018, Food Science and Biotechnology.

[23]  Maciej Duda,et al.  Yeast as a Versatile Tool in Biotechnology , 2017 .

[24]  D. Maghradze,et al.  Wild Grape-Associated Yeasts as Promising Biocontrol Agents against Vitis vinifera Fungal Pathogens , 2017, Front. Microbiol..

[25]  M. Nicolaisen,et al.  Spatiotemporal Variation and Networks in the Mycobiome of the Wheat Canopy , 2017, Front. Plant Sci..

[26]  F. Villa,et al.  Fungal Biofilms: Targets for the Development of Novel Strategies in Plant Disease Management , 2017, Front. Microbiol..

[27]  B. Bahnmann,et al.  Drivers of yeast community composition in the litter and soil of a temperate forest , 2017, FEMS microbiology ecology.

[28]  Rujikan Nasanit,et al.  Yeast diversity and novel yeast D1/D2 sequences from corn phylloplane obtained by a culture-independent approach , 2016, Antonie van Leeuwenhoek.

[29]  Sudhir Kumar,et al.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. , 2016, Molecular biology and evolution.

[30]  Rujikan Nasanit,et al.  The assessment of epiphytic yeast diversity in sugarcane phyllosphere in Thailand by culture-independent method. , 2015, Fungal biology.

[31]  Yongsheng Liu,et al.  Increase in antioxidant enzyme activity, stress tolerance and biocontrol efficacy of Pichia kudriavzevii with the transition from a yeast-like to biofilm morphology , 2015 .

[32]  Y. Sakai,et al.  Regulation of nitrate and methylamine metabolism by multiple nitrogen sources in the methylotrophic yeast Candida boidinii. , 2015, FEMS yeast research.

[33]  M. Nicolaisen,et al.  Host genotype is an important determinant of the cereal phyllosphere mycobiome. , 2015, The New phytologist.

[34]  P. Paul,et al.  Reduction of Fusarium head blight using prothioconazole and prothioconazole-tolerant variants of the Fusarium head blight antagonist Cryptococcus flavescens OH 182.9 , 2015 .

[35]  J. White,et al.  Optimization of isolation and cultivation of bacterial endophytes through addition of plant extract to nutrient media , 2015, Microbial biotechnology.

[36]  Rujikan Nasanit,et al.  Assessment of epiphytic yeast diversity in rice (Oryza sativa) phyllosphere in Thailand by a culture-independent approach , 2015, Antonie van Leeuwenhoek.

[37]  H. Friberg,et al.  Fungicide Effects on Fungal Community Composition in the Wheat Phyllosphere , 2014, PloS one.

[38]  Zhang Jingxin,et al.  Biofilm formation by Fusarium oxysporum f. sp. cucumerinum and susceptibility to environmental stress. , 2014, FEMS microbiology letters.

[39]  J. Vorholt Microbial life in the phyllosphere , 2012, Nature Reviews Microbiology.

[40]  I. Chernov,et al.  Seasonal dynamics of the structure of epiphytic yeast communities , 2010, Microbiology.

[41]  D. Libkind,et al.  Photoprotection by carotenoid pigments in the yeast Rhodotorula mucilaginosa: the role of torularhodin , 2010, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

[42]  David S. Wishart,et al.  MetaboAnalyst: a web server for metabolomic data analysis and interpretation , 2009, Nucleic Acids Res..

[43]  S. Agathos,et al.  Lignocellulose-degrading enzyme production by white-rot Basidiomycetes isolated from the forests of Georgia , 2009 .

[44]  I. Chernov,et al.  Seasonal dynamic of the numbers of epiphytic yeasts , 2007, Microbiology.

[45]  T. Deák Environmental Factors Influencing Yeasts , 2006 .

[46]  M. Boehm,et al.  Field testing of antagonists of Fusarium head blight incited by Gibberella zeae , 2004 .

[47]  M. Boehm,et al.  Greenhouse and Field Evaluation of Biological Control of Fusarium Head Blight on Durum Wheat. , 2002, Plant disease.

[48]  M. Boehm,et al.  Selection and Evaluation of Microorganisms for Biocontrol of Fusarium Head Blight of Wheat Incited by Gibberella zeae. , 2001, Plant disease.

[49]  S. Lindow,et al.  Appetite of an epiphyte: Quantitative monitoring of bacterial sugar consumption in the phyllosphere , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[50]  S. Lindow,et al.  Role of Leaf Surface Sugars in Colonization of Plants by Bacterial Epiphytes , 2000, Applied and Environmental Microbiology.

[51]  T. Miedaner,et al.  Association among aggressiveness, fungal colonization, and mycotoxin production of 26 isolates of Fusarium graminearum in winter rye head blight. , 2000 .

[52]  J. Andrews Biological control in the phyllosphere. , 1992, Annual review of phytopathology.

[53]  D. Lane 16S/23S rRNA sequencing , 1991 .

[54]  R. Sylvester-Bradley,et al.  Physiology in the production and improvement of cereals. , 1990 .

[55]  T. White Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , 1990 .

[56]  E. Bashi,et al.  Environmental factors limiting growth of Sporobolomyces roseus, an antagonist of Cochliobolus sativus, on wheat leaves , 1977 .

[57]  J. Zadoks A decimal code for the growth stages of cereals , 1974 .