Control of Vibrio vulnificus proliferation in the Baltic Sea through eutrophication and algal bloom management
暂无分享,去创建一个
L. Riemann | C. Hassenrück | K. Piwosz | Theodor Sperlea | G. Gyraitė | L. F. Delgado | Tbh Reusch | Daniel P. R. Herlemann | David J. Riedinger | Victor Fernández-Juárez | Christian Pansch | Marija Kataržytė | Florian Bruck | Alwin Ahrens | Marcin Rakowski | Angela Stevenson | Detlef Schulz-Bull | Heike Benterbusch-Brockmöller | Sandra Kube | Susann Dupke | Anders F. Andersson | Matthias Labrenz
[1] A. Huq,et al. Genomic diversity of Vibrio spp. and metagenomic analysis of pathogens in Florida Gulf coastal waters following Hurricane Ian , 2023, mBio.
[2] R. Colwell,et al. Environmental Factors Influencing Occurrence of Vibrio parahaemolyticus and Vibrio vulnificus , 2023, Applied and environmental microbiology.
[3] S. Karpov,et al. The new chytridiomycete Paradinomyces triforaminorum gen. et sp. nov. co-occurs with other parasitoids during a Kryptoperidinium foliaceum (Dinophyceae) bloom in the Baltic Sea. , 2022, Harmful algae.
[4] S. Mikhail,et al. Molecular taxonomical identification and phylogenetic relationships of some marine dominant algal species during red tide and harmful algal blooms along Egyptian coasts in the Alexandria region , 2022, Environmental Science and Pollution Research.
[5] K. Flynn,et al. Acquired Phototrophy and Its Implications for Bloom Dynamics of the Teleaulax-Mesodinium-Dinophysis-Complex , 2022, Frontiers in Marine Science.
[6] Anders F. Andersson,et al. Short‐ and long‐read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing , 2021, Molecular ecology resources.
[7] M. Christner,et al. Heatwave-associated Vibrio infections in Germany, 2018 and 2019 , 2021, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[8] G. Lindström,et al. Climate Change in the Baltic Sea Region: A Summary , 2021, Earth System Dynamics.
[9] H. Fickenscher,et al. Nicht-Cholera-Vibrionen – derzeit noch seltene, aber wachsende Infektionsgefahr in Nord- und Ostsee , 2021, Der Internist.
[10] P. Kujala,et al. Natural Hazards and Extreme Events in the Baltic Sea region , 2021, Earth System Dynamics.
[11] U. Hentschel,et al. Lower Vibrio spp. abundances in Zostera marina leaf canopies suggest a novel ecosystem function for temperate seagrass beds , 2021, Marine Biology.
[12] Ø. Moestrup,et al. Dimorphism in cryptophytes—The case of Teleaulax amphioxeia/Plagioselmis prolonga and its ecological implications , 2020, Science Advances.
[13] B. Kreikemeyer,et al. Impact of coastal aquaculture operation systems in Hainan island (China) on the relative abundance and community structure of Vibrio in adjacent coastal systems , 2020 .
[14] Romdhane Rekaya,et al. Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext) , 2019, PeerJ.
[15] R. Ramasubburayan,et al. Screening, partial purification of antivibriosis metabolite sterol-glycosides from Rhodococcus sp. against aquaculture associated pathogens. , 2019, Microbial pathogenesis.
[16] J. Bowman,et al. Impacts of Zostera eelgrasses on microbial community structure in San Diego coastal waters , 2019, Elementa: Science of the Anthropocene.
[17] D. Honda,et al. Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem , 2019, PloS one.
[18] Dong-Min Kim,et al. Vibrio vulnificus infection: a persistent threat to public health , 2018, The Korean journal of internal medicine.
[19] M. Doebeli,et al. Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem , 2018, Microbiome.
[20] U. Stingl,et al. The Seagrass Holobiont and Its Microbiome , 2017, Microorganisms.
[21] P. Sandifer,et al. Temporal and Environmental Factors Driving Vibrio Vulnificus and V. Parahaemolyticus Populations and Their Associations With Harmful Algal Blooms in South Carolina Detention Ponds and Receiving Tidal Creeks , 2017, GeoHealth.
[22] F. Sönnichsen,et al. Identification of rosmarinic acid and sulfated flavonoids as inhibitors of microfouling on the surface of eelgrass Zostera marina , 2017, Biofouling.
[23] J. Rocklöv,et al. Environmental Suitability of Vibrio Infections in a Warming Climate: An Early Warning System , 2017, Environmental health perspectives.
[24] P. Larsson,et al. Remediation of a Eutrophic Bay in the Baltic Sea. , 2017, Environmental science & technology.
[25] E. Fiorenza,et al. Seagrass ecosystems reduce exposure to bacterial pathogens of humans, fishes, and invertebrates , 2017, Science.
[26] Hao Chen,et al. flowAI: automatic and interactive anomaly discerning tools for flow cytometry data , 2016, Bioinform..
[27] Paul J. McMurdie,et al. DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.
[28] A. Godhe,et al. Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom , 2016, Front. Microbiol..
[29] G. Muyzer,et al. Rhizosphere Microbiomes of European Seagrasses Are Selected by the Plant, But Are Not Species Specific , 2016, Front. Microbiol..
[30] Wen J. Li,et al. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation , 2015, Nucleic Acids Res..
[31] K. Coyne,et al. Community-Level and Species-Specific Associations between Phytoplankton and Particle-Associated Vibrio Species in Delaware's Inland Bays , 2015, Applied and Environmental Microbiology.
[32] S. Balzano,et al. Protist diversity along a salinity gradient in a coastal lagoon , 2015 .
[33] Robert Hein,et al. rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development , 2014, Nucleic Acids Res..
[34] J. L. Pérez-Lloréns,et al. Interactions between Seagrass Complexity, Hydrodynamic Flow and Biomixing Alter Food Availability for Associated Filter-Feeding Organisms , 2014, PloS one.
[35] S. A. Boers,et al. Vibrio vulnificus outbreaks in Dutch eel farms since 1996: strain diversity and impact. , 2014, Diseases of aquatic organisms.
[36] P. Gajer,et al. An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform , 2014, Microbiome.
[37] Bertrand Michel,et al. Correlation and variable importance in random forests , 2013, Statistics and Computing.
[38] J. Triñanes,et al. Emerging Vibrio risk at high latitudes in response to ocean warming , 2013 .
[39] Pelin Yilmaz,et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..
[40] Stéphane Audic,et al. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy , 2012, Nucleic Acids Res..
[41] Arlene Chen,et al. Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States) , 2012, Applied and Environmental Microbiology.
[42] R. Colwell,et al. Temporal and Spatial Variability in the Distribution of Vibrio vulnificus in the Chesapeake Bay: A Hindcast Study , 2011, EcoHealth.
[43] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[44] C. Humborg,et al. History and scenarios of future development of Baltic Sea eutrophication , 2011 .
[45] Emily S. Charlson,et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications , 2011, Nature Biotechnology.
[46] Anders F. Andersson,et al. Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea , 2011, The ISME Journal.
[47] S. Kirchner,et al. Pentaplexed Quantitative Real-Time PCR Assay for the Simultaneous Detection and Quantification of Botulinum Neurotoxin-Producing Clostridia in Food and Clinical Samples , 2010, Applied and Environmental Microbiology.
[48] C. Baker-Austin,et al. Environmental occurrence and clinical impact of Vibrio vulnificus and Vibrio parahaemolyticus: a European perspective. , 2010, Environmental microbiology reports.
[49] R. Feistel,et al. Vertical mixing in the Baltic Sea and consequences for eutrophication - A review , 2009 .
[50] Raphael Gottardo,et al. flowClust: a Bioconductor package for automated gating of flow cytometry data , 2009, BMC Bioinformatics.
[51] F. Yildiz,et al. Vibrio biofilms: so much the same yet so different. , 2009, Trends in microbiology.
[52] Max Kuhn,et al. Building Predictive Models in R Using the caret Package , 2008 .
[53] J. Oliver,et al. The ecology of Vibrio vulnificus, Vibrio cholerae, and Vibrio parahaemolyticus in North Carolina Estuaries , 2008, The Journal of Microbiology.
[54] Sébastien Lê,et al. FactoMineR: An R Package for Multivariate Analysis , 2008 .
[55] R. Noble,et al. Vibrio and phytoplankton dynamics during the summer of 2004 in a eutrophying estuary. , 2007 .
[56] A. Eiler,et al. Growth response of Vibrio cholerae and other Vibrio spp. to cyanobacterial dissolved organic matter and temperature in brackish water. , 2007, FEMS microbiology ecology.
[57] A. Eiler,et al. Environmental Influences on Vibrio Populations in Northern Temperate and Boreal Coastal Waters (Baltic and Skagerrak Seas) , 2006, Applied and Environmental Microbiology.
[58] K. Alpers,et al. Vibrio vulnificus wound infections after contact with the Baltic Sea, Germany. , 2006, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[59] D. McDougald,et al. The role of quorum sensing and the effect of environmental conditions on biofilm formation by strains of Vibrio vulnificus , 2006, Biofouling.
[60] D. McDougald,et al. Biofilm formation and phenotypic variation enhance predation-driven persistence of Vibrio cholerae. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[61] S. Friesecke,et al. Two cases of severe sepsis due to Vibrio vulnificus wound infection acquired in the Baltic Sea , 2004, European Journal of Clinical Microbiology and Infectious Diseases.
[62] A. Bej,et al. Multiplex PCR detection of clinical and environmental strains of Vibrio vulnificus in shellfish. , 2004, Canadian journal of microbiology.
[63] M. Polz,et al. Effects of Temperature and Salinity on Vibrio vulnificus Population Dynamics as Assessed by Quantitative PCR , 2004, Applied and Environmental Microbiology.
[64] B. Peterson,et al. Positive interactions between suspension-feeding bivalves and seagrass-a facultative mutualism , 2001 .
[65] Josep M. Gasol,et al. Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities , 2000 .
[66] J. Oliver,et al. Pathogenesis of Vibrio vulnificus. , 1999, FEMS microbiology letters.
[67] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[68] Worcester Se,et al. Effects of eelgrass beds on advection and turbulent mixing in low current and low shoot density environments , 1995 .
[69] S. Nixon. Coastal marine eutrophication: A definition, social causes, and future concerns , 1995 .
[70] S. Rippey,et al. Infectious diseases associated with molluscan shellfish consumption , 1994, Clinical Microbiology Reviews.
[71] P. Jumars,et al. Flow Environments of Aquatic Benthos , 1984 .
[72] I. Wallentinus. Comparisons of nutrient uptake rates for Baltic macroalgae with different thallus morphologies , 1984 .
[73] J. Fisher,et al. Influence of the seagrass, Zostera marina L., on current flow☆ , 1982 .
[74] Daniel A. Lemley,et al. Bacterial community dynamics during a harmful algal bloom of Heterosigma akashiwo , 2021 .
[75] J. Köster,et al. Snakemake - a scalable bioinformatics workflow engine , 2018, Bioinform..
[76] J. Triñanes,et al. Non-Cholera Vibrios: The Microbial Barometer of Climate Change. , 2017, Trends in microbiology.
[77] Birgitta König-Ries,et al. Towards an Integrated Biodiversity and Ecological Research Data Management and Archiving Platform: The German Federation for the Curation of Biological Data (GFBio) , 2014, GI-Jahrestagung.
[78] R. Pesch,et al. Eutrophication assessment of the Baltic Sea Protected Areas by available data and GIS technologies. , 2011, Marine pollution bulletin.
[79] C. Humborg,et al. Second Assessment of Climate Change for the Baltic Sea Basin , 2008 .
[80] Steven Smriga,et al. Trophic regulation of Vibrio cholerae in coastal marine waters. , 2006, Environmental microbiology.
[81] A. Wright,et al. Expression of Vibrio vulnificus Capsular Polysaccharide Inhibits Biofilm Formation , 2004 .
[82] James R. Cole,et al. rrndb: the Ribosomal RNA Operon Copy Number Database , 2001, Nucleic Acids Res..
[83] L. Breiman. Random Forests , 2001, Machine Learning.
[84] M. Ehrhardt,et al. Methods of Seawater Analysis (3rd Edition) , 1999 .
[85] H. A. Thomsen,et al. New observations on the heterotrophic protist genus Thaumatomastix (Thaumatomastigaceae, Protista incerta sedis), with particular emphasis on material from the Baltic Sea , 1993 .