Microbial engineering strategies to improve cell viability for biochemical production.
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Binbin Chen | Wei Suong Teo | Hua Ling | M. Chang | H. Ling | Binbin Chen | A. Kang | Matthew Wook Chang | Tat-Ming Lo | W. S. Teo | Aram Kang | Tat-Ming Lo
[1] G. Stephanopoulos,et al. Global transcription machinery engineering: a new approach for improving cellular phenotype. , 2007, Metabolic engineering.
[2] W. V. van Zyl,et al. The metabolic burden of the PGK1 and ADH2 promoter systems for heterologous xylanase production by Saccharomyces cerevisiae in defined medium. , 2001, Biotechnology and bioengineering.
[3] L. Hou,et al. Improved Production of Ethanol by Novel Genome Shuffling in Saccharomyces cerevisiae , 2010, Applied biochemistry and biotechnology.
[4] D. Rees,et al. ABC transporters: the power to change , 2009, Nature Reviews Molecular Cell Biology.
[5] Mojca Benčina,et al. DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency , 2011, Nucleic acids research.
[6] G. Church,et al. Analysis of optimality in natural and perturbed metabolic networks , 2002 .
[7] Paul V. Attfield,et al. Stress tolerance: The key to effective strains of industrial baker's yeast , 1997, Nature Biotechnology.
[8] Jun Hyoung Lee,et al. Phenotypic engineering by reprogramming gene transcription using novel artificial transcription factors in Escherichia coli , 2008, Nucleic acids research.
[9] Jay D. Keasling,et al. A model for improving microbial biofuel production using a synthetic feedback loop , 2010, Systems and Synthetic Biology.
[10] Alfonso Jaramillo,et al. DESHARKY: automatic design of metabolic pathways for optimal cell growth , 2008, Bioinform..
[11] Ronan M. T. Fleming,et al. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 , 2007, Nature Protocols.
[12] G. Stephanopoulos,et al. Engineering Yeast Transcription Machinery for Improved Ethanol Tolerance and Production , 2006, Science.
[13] Jeffrey D Orth,et al. What is flux balance analysis? , 2010, Nature Biotechnology.
[14] D. Endy,et al. Refinement and standardization of synthetic biological parts and devices , 2008, Nature Biotechnology.
[15] Colin Hughes,et al. Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export , 2000, Nature.
[16] J. Keasling. Manufacturing Molecules Through Metabolic Engineering , 2010, Science.
[17] Kate Thodey,et al. Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways. , 2012, Metabolic engineering.
[18] Claudia Schmidt-Dannert,et al. Engineered Protein Nano-Compartments for Targeted Enzyme Localization , 2012, PloS one.
[19] M. Chang,et al. Identification and reconstitution of genetic regulatory networks for improved microbial tolerance to isooctane. , 2012, Molecular bioSystems.
[20] Ryan T Gill,et al. Genes restoring redox balance in fermentation-deficient E. coli NZN111. , 2009, Metabolic engineering.
[21] Alan Villalobos,et al. Designing genes for successful protein expression. , 2011, Methods in enzymology.
[22] R. Aono,et al. Entry into and Release of Solvents byEscherichia coli in an Organic-Aqueous Two-Liquid-Phase System and Substrate Specificity of the AcrAB-TolC Solvent-Extruding Pump , 2000, Journal of bacteriology.
[23] M. Dunlop. Engineering microbes for tolerance to next-generation biofuels , 2011, Biotechnology for biofuels.
[24] J. Keasling,et al. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids , 2012, Nature Biotechnology.
[25] Harvey W Blanch,et al. Escherichia coli for biofuel production: bridging the gap from promise to practice. , 2012, Trends in biotechnology.
[26] E. Papoutsakis,et al. A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation. , 2010, Metabolic engineering.
[27] Chueh Loo Poh,et al. Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen , 2011, Molecular systems biology.
[28] Jay D. Keasling,et al. Engineering Static and Dynamic Control of Synthetic Pathways , 2010, Cell.
[29] Jin-Ho Seo,et al. Analysis of E. coli phoA‐lacZ fusion gene expression inserted into a multicopy plasmid and host cell's chromosome , 1990, Biotechnology and bioengineering.
[30] E. Bokma,et al. Directed evolution of a bacterial efflux pump: Adaptation of the E. coli TolC exit duct to the Pseudomonas MexAB translocase , 2006, FEBS letters.
[31] M. Oldiges,et al. Metabolic impact of redox cofactor perturbations in Saccharomyces cerevisiae. , 2009, Metabolic engineering.
[32] W. R. Farmer,et al. Improving lycopene production in Escherichia coli by engineering metabolic control , 2000, Nature Biotechnology.
[33] Terence Hwa,et al. Bacterial growth laws and their applications. , 2011, Current opinion in biotechnology.
[34] V. Price,et al. Expression of heterologous proteins in Saccharomyces cerevisiae using the ADH2 promoter. , 1990, Methods in enzymology.
[35] Kiyoko F. Aoki-Kinoshita,et al. From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..
[36] Alan Villalobos,et al. Gene Designer: a synthetic biology tool for constructing artificial DNA segments , 2006, BMC Bioinformatics.
[37] D. Oh,et al. Directing vanillin production from ferulic acid by increased acetyl‐CoA consumption in recombinant Escherichia coli , 2009, Biotechnology and bioengineering.
[38] William C. Deloache,et al. Spatial organization of enzymes for metabolic engineering. , 2012, Metabolic engineering.
[39] Yan Zhu,et al. Engineering the robustness of industrial microbes through synthetic biology. , 2012, Trends in microbiology.
[40] T. Nyström. The glucose‐starvation stimulon of Escherichia coli: induced and repressed synthesis of enzymes of central metabolic pathways and role of acetyl phosphate in gene expression and starvation survival , 1994, Molecular microbiology.
[41] Rainer Breitling,et al. Computational tools for the synthetic design of biochemical pathways , 2012, Nature Reviews Microbiology.
[42] Rongrong Jiang,et al. Random mutagenesis of global transcription factor cAMP receptor protein for improved osmotolerance , 2012, Biotechnology and bioengineering.
[43] Ana Rita Brochado,et al. Improved vanillin production in baker's yeast through in silico design , 2010, Microbial cell factories.
[44] Vassily Hatzimanikatis,et al. Computational framework for predictive biodegradation , 2009, Biotechnology and bioengineering.
[45] Zhanglin Lin,et al. Significant Rewiring of the Transcriptome and Proteome of an Escherichia coli Strain Harboring a Tailored Exogenous Global Regulator IrrE , 2012, PloS one.
[46] J. Gancedo. Yeast Carbon Catabolite Repression , 1998, Microbiology and Molecular Biology Reviews.
[47] Jens Nielsen,et al. Combined metabolic engineering of precursor and co-factor supply to increase α-santalene production by Saccharomyces cerevisiae , 2012, Microbial Cell Factories.
[48] E. Duque,et al. Three Efflux Pumps Are Required To Provide Efficient Tolerance to Toluene in Pseudomonas putidaDOT-T1E , 2001, Journal of bacteriology.
[49] Fuzhong Zhang,et al. Biosensors and their applications in microbial metabolic engineering. , 2011, Trends in microbiology.
[50] Faisal A. Aldaye,et al. Organization of Intracellular Reactions with Rationally Designed RNA Assemblies , 2011, Science.
[51] Ana Segura,et al. Mechanisms of solvent tolerance in gram-negative bacteria. , 2002, Annual review of microbiology.
[52] Hal S. Alper,et al. Promoter engineering: Recent advances in controlling transcription at the most fundamental level , 2013, Biotechnology journal.
[53] Gabriel C. Wu,et al. Synthetic protein scaffolds provide modular control over metabolic flux , 2009, Nature Biotechnology.
[54] E. Papoutsakis,et al. Dynamics of Genomic-Library Enrichment and Identification of Solvent Tolerance Genes for Clostridium acetobutylicum , 2007, Applied and Environmental Microbiology.
[55] W. R. Cluett,et al. Dynamic metabolic engineering for increasing bioprocess productivity. , 2008, Metabolic engineering.
[56] Bernhard O. Palsson,et al. BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions , 2010, BMC Bioinformatics.
[57] L. Blank,et al. Selected Pseudomonas putida Strains Able To Grow in the Presence of High Butanol Concentrations , 2009, Applied and Environmental Microbiology.
[58] J. Liao,et al. An integrated network approach identifies the isobutanol response network of Escherichia coli , 2009, Molecular systems biology.
[59] M. Oldiges,et al. Metabolic Impact of Increased NADH Availability in Saccharomyces cerevisiae , 2009, Applied and Environmental Microbiology.
[60] H. Sahm,et al. Improving d-mannitol productivity of Escherichia coli: impact of NAD, CO2 and expression of a putative sugar permease from Leuconostoc pseudomesenteroides. , 2009, Metabolic engineering.
[61] R. Montange,et al. Riboswitches: emerging themes in RNA structure and function. , 2008, Annual review of biophysics.
[62] David P. Clark,et al. The IdhA Gene Encoding the Fermentative Lactate Dehydrogenase of Escherichia Coli , 1997 .
[63] G. Bennett,et al. The effect of NAPRTase overexpression on the total levels of NAD, the NADH/NAD+ ratio, and the distribution of metabolites in Escherichia coli. , 2002, Metabolic engineering.
[64] Pamela A Silver,et al. Designing biological compartmentalization. , 2012, Trends in cell biology.
[65] M. Kleerebezem,et al. Cofactor Engineering: a Novel Approach to Metabolic Engineering in Lactococcus lactis by Controlled Expression of NADH Oxidase , 1998, Journal of bacteriology.
[66] D. Schnappinger,et al. Biosynthesis and Recycling of Nicotinamide Cofactors in Mycobacterium tuberculosis , 2008, Journal of Biological Chemistry.
[67] Ka-Yiu San,et al. Metabolic engineering of Escherichia coli: increase of NADH availability by overexpressing an NAD(+)-dependent formate dehydrogenase. , 2002, Metabolic engineering.
[68] S. Dequin,et al. Cofactor engineering in Saccharomyces cerevisiae: Expression of a H2O-forming NADH oxidase and impact on redox metabolism. , 2006, Metabolic engineering.
[69] Sara Hooshangi,et al. Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli. , 2010, Metabolic engineering.
[70] V. Hatzimanikatis,et al. Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate , 2010, Biotechnology and bioengineering.
[71] C. Higgins,et al. Multiple molecular mechanisms for multidrug resistance transporters , 2007, Nature.
[72] Julie A. Dickerson,et al. Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities , 2011, BMC Bioinformatics.
[73] Jack T Pronk,et al. Physiological and genetic engineering of cytosolic redox metabolism in Saccharomyces cerevisiae for improved glycerol production. , 2006, Metabolic engineering.
[74] A. Burgard,et al. Optknock: A bilevel programming framework for identifying gene knockout strategies for microbial strain optimization , 2003, Biotechnology and bioengineering.
[75] M. Futai. Stimulation of Transport into Escherichia coli Membrane Vesicles by Internally Generated Reduced Nicotinamide Adenine Dinucleotide , 1974, Journal of bacteriology.
[76] Vassily Hatzimanikatis,et al. A computational framework for the design of optimal protein synthesis , 2012, Biotechnology and bioengineering.
[77] Pamela A Silver,et al. Natural strategies for the spatial optimization of metabolism in synthetic biology. , 2012, Nature chemical biology.
[78] S. Günther,et al. Structural basis of enzyme encapsulation into a bacterial nanocompartment , 2008, Nature Structural &Molecular Biology.
[79] P. Rogers,et al. Generation and characterisation of stable ethanol-tolerant mutants of Saccharomyces cerevisiae , 2010, Journal of Industrial Microbiology & Biotechnology.
[80] J. Collado-Vides,et al. Regulation by transcription factors in bacteria: beyond description , 2008, FEMS microbiology reviews.
[81] J. Keasling,et al. High-throughput metabolic engineering: advances in small-molecule screening and selection. , 2010, Annual review of biochemistry.
[82] Santiago Garcia-Vallvé,et al. Working toward a new NIOSH. , 1996, Nucleic Acids Res..
[83] I. Mannazzu,et al. Behaviour of Saccharomyces cerevisiae wine strains during adaptation to unfavourable conditions of fermentation on synthetic medium: cell lipid composition, membrane integrity, viability and fermentative activity. , 2008, International journal of food microbiology.
[84] J. Keasling,et al. Engineering microbial biofuel tolerance and export using efflux pumps , 2011, Molecular systems biology.
[85] Miguel C. Teixeira,et al. Increased expression of the yeast multidrug resistance ABC transporter Pdr18 leads to increased ethanol tolerance and ethanol production in high gravity alcoholic fermentation , 2012, Microbial Cell Factories.
[86] K. V. van Wijk,et al. Consequences of Membrane Protein Overexpression in Escherichia coli*S , 2007, Molecular & Cellular Proteomics.
[87] K. Poole,et al. Role of the Multidrug Efflux Systems ofPseudomonas aeruginosa in Organic Solvent Tolerance , 1998, Journal of bacteriology.
[88] Pao-Yang Chen,et al. Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli , 2010, Molecular systems biology.
[89] R. Mahadevan,et al. Estimating optimal profiles of genetic alterations using constraint-based models. , 2005, Biotechnology and bioengineering.
[90] Christopher A. Voigt,et al. Automated Design of Synthetic Ribosome Binding Sites to Precisely Control Protein Expression , 2009, Nature Biotechnology.
[91] D. Yernool,et al. Restrained expression, a method to overproduce toxic membrane proteins by exploiting operator–repressor interactions , 2011, Protein science : a publication of the Protein Society.
[92] B. Bassler,et al. Quorum sensing in bacteria. , 2001, Annual review of microbiology.
[93] T. Hwa,et al. Interdependence of Cell Growth and Gene Expression: Origins and Consequences , 2010, Science.
[94] Marina Lotti,et al. Laboratory evolution of copper tolerant yeast strains , 2012, Microbial Cell Factories.
[95] G. Bennett,et al. Metabolic engineering through cofactor manipulation and its effects on metabolic flux redistribution in Escherichia coli. , 2002, Metabolic engineering.
[96] H. Alper,et al. Global strain engineering by mutant transcription factors. , 2011, Methods in molecular biology.
[97] Donald Hilvert,et al. Directed Evolution of a Protein Container , 2011, Science.
[98] S. Avery,et al. Destabilized green fluorescent protein for monitoring dynamic changes in yeast gene expression with flow cytometry , 2000, Yeast.
[99] Jeffrey D Varner,et al. Engineering the spatial organization of metabolic enzymes: mimicking nature's synergy. , 2008, Current opinion in biotechnology.
[100] Hal Alper,et al. Development of systematic and combinatorial approaches for the metabolic engineering of microorganisms , 2006 .
[101] Joshua K. Michener,et al. High-throughput enzyme evolution in Saccharomyces cerevisiae using a synthetic RNA switch. , 2012, Metabolic engineering.
[102] Z. Deng,et al. Overexpression of the ABC transporter AvtAB increases avermectin production in Streptomyces avermitilis , 2011, Applied Microbiology and Biotechnology.
[103] W. Martin,et al. Evolutionary origins of metabolic compartmentalization in eukaryotes , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.
[104] N. Price,et al. Genome-Scale Consequences of Cofactor Balancing in Engineered Pentose Utilization Pathways in Saccharomyces cerevisiae , 2011, PloS one.
[105] W. Lu,et al. Improved Osmotic Tolerance and Ethanol Production of Ethanologenic Escherichia coli by IrrE, a Global Regulator of Radiation-Resistance of Deinococcus radiodurans , 2011, Current Microbiology.
[106] J. Bont,et al. Solvent-tolerant bacteria in biocatalysis , 1998 .
[107] J. Keasling,et al. Low-copy plasmids can perform as well as or better than high-copy plasmids for metabolic engineering of bacteria. , 2000, Metabolic engineering.
[108] Ming Yan,et al. gTME for Improved Xylose Fermentation of Saccharomyces cerevisiae , 2010, Applied biochemistry and biotechnology.
[109] K. Vogel,et al. The yeast phosphatase system , 1990, Molecular microbiology.
[110] M. Inui,et al. Improvement of the Redox Balance Increases l-Valine Production by Corynebacterium glutamicum under Oxygen Deprivation Conditions , 2011, Applied and Environmental Microbiology.
[111] Samuel Wagner,et al. Tuning Escherichia coli for membrane protein overexpression , 2008, Proceedings of the National Academy of Sciences.
[112] Anton Glieder,et al. Engineering the Pichia pastoris methanol oxidation pathway for improved NADH regeneration during whole-cell biotransformation. , 2010, Metabolic engineering.
[113] R. Weiss,et al. Programmed population control by cell–cell communication and regulated killing , 2004, Nature.
[114] R. Patnaik. Engineering Complex Phenotypes in Industrial Strains , 2012, Biotechnology progress.