The diazofluorene antitumor antibiotics: structural elucidation, biosynthetic, synthetic, and chemical biological studies.

This review presents a comprehensive survey of all aspects of the kinamycins and lomaiviticins, potent antiproliferative antimicrobial metabolites isolated from various strains of Streptomyces and Salinispora. The kinamycins and lomaiviticins contain a diazotetrahydrobenzo[b]fluorene (diazofluorene) functional group, which is unique among known natural products. This review begins with an account of the studies leading to the final (correct) structure determination of the kinamycins, which were originally proposed to contain an N-cyano carbazole function. This is followed by a discussion of biosynthetic studies, which established the polyketide nature of the kinamycins. Descriptions of four completed syntheses of various kinamycins, synthetic studies toward the lomaiviticins, syntheses of the carbohydrates of the lomaiviticins, and syntheses of structurally-related metabolites, are then presented. A survey of chemical biological investigations, including in vitro reactivity studies, which indicate that the kinamycins and lomaiviticins may form reactive ortho-quinone methide or free radical intermediates in vivo, is presented. Finally, a selection of structurally-related metabolites are described.

[1]  J. Porco,et al.  Asymmetric total synthesis of the epoxykinamycin FL-120 B'. , 2011, Angewandte Chemie.

[2]  R. Schmidt New Methods for the Synthesis of Glycosides and Oligosaccharides—Are There Alternatives to the Koenigs‐Knorr Method? [New Synthetic Methods (56)] , 1986 .

[3]  K. Nicolaou,et al.  Modulation of the Reactivity Profile of IBX by Ligand Complexation: Ambient Temperature Dehydrogenation of Aldehydes and Ketones to α,β‐Unsaturated Carbonyl Compounds , 2002 .

[4]  J. Clardy,et al.  Pyrrolosporin A, a new antitumor antibiotic from Micromonospora sp. C39217-R109-7. II. Isolation, physico-chemical properties, spectroscopic study and X-ray analysis. , 1996, The Journal of antibiotics.

[5]  A. Richardson,et al.  Lomaiviticins A and B, potent antitumor antibiotics from Micromonospora lomaivitiensis. , 2001, Journal of the American Chemical Society.

[6]  C. Melander,et al.  Kinamycin-mediated DNA cleavage under biomimetic conditions , 2008 .

[7]  V. Gouverneur,et al.  Enantioselective synthesis of a key "A-ring" intermediate for the preparation of 1alpha-fluoro vitamin D3 analogues. , 2006, The Journal of organic chemistry.

[8]  S. Gould,et al.  New products related to kinamycin from Streptomyces murayamaensis. II. Structures of pre-kinamycin, keto-anhydrokinamycin, and kinamycins E and F. , 1989, The Journal of antibiotics.

[9]  J. Mayer,et al.  Oxidations of hydrocarbons by manganese(III) tris(hexafluoroacetylacetonate). , 2002, Inorganic chemistry.

[10]  S. Ōmura,et al.  The Crystal and Molecular Structure of Kinamycin C p-Bromobenzoate , 1972 .

[11]  S. Herzon,et al.  11-Step enantioselective synthesis of (-)-lomaiviticin aglycon. , 2011, Journal of the American Chemical Society.

[12]  R. C. Yao,et al.  A83016A, a new kinamycin type antibiotic. , 1992, The Journal of antibiotics.

[13]  H. Koyama,et al.  Total syntheses of O4,O9-dimethylstealthins A and C1 , 1998 .

[14]  F. Hauser,et al.  TOTAL SYNTHESIS OF THE STRUCTURE PROPOSED FOR PREKINAMYCIN , 1996 .

[15]  S. Ōmura,et al.  Structures and Biological Properties of Kinamycin A, B, C, and D , 1973 .

[16]  M. VanNieuwenhze,et al.  Catalytic Asymmetric Dihydroxylation , 1994 .

[17]  Yian Shi,et al.  An Efficient Catalytic Asymmetric Epoxidation Method , 1997 .

[18]  S. Gould,et al.  New products related to kinamycin from Streptomyces murayamaensis. I. Taxonomy, production, isolation and biological properties. , 1989, The Journal of antibiotics.

[19]  A. Myers,et al.  Practical procedures for the preparation of N-tert-butyldimethylsilylhydrazones and their use in modified Wolff-Kishner reductions and in the synthesis of vinyl halides and gem-dihalides. , 2004, Journal of the American Chemical Society.

[20]  R. Schmidt,et al.  Direct O-glycosyl trichloroacetimidate formation: nucleophilicity of the anomeric oxygen atom , 1984 .

[21]  V. Aggarwal,et al.  Metal- and Ligand-Accelerated Catalysis of the Baylis-Hillman Reaction. , 1998, The Journal of organic chemistry.

[22]  R. Tolman,et al.  A convenient, high-yield synthesis of l-oleandrose and l-oleandral☆ , 1989 .

[23]  S. Ikegami,et al.  An Attempt at the Direct Construction of 2-Deoxy-β-glycosidic Linkages Capitalizing on 2-Deoxyglycopyranosyl Diethyl Phosphites as Glycosyl Donors , 1995 .

[24]  E. Carreira,et al.  Directed reduction of .beta.-hydroxy ketones employing tetramethylammonium triacetoxyborohydride , 1988 .

[25]  R. Schmidt,et al.  Anomeric O‐alkylation, 11. Anomeric O‐Alkylation of O‐Unprotected Hexoses and Pentoses – Convenient Synthesis of Decyl, Benzyl, and Allyl Glycosides , 1993 .

[26]  V. Snieckus,et al.  Combined Directed Ortho-, Remote-Metalation and Cross-Coupling Strategies. Concise Syntheses of the Kinamycin Biosynthetic Grid Antibiotics Phenanthroviridin Aglycon and Kinobscurinone. , 1997, The Journal of organic chemistry.

[27]  R. Williamson,et al.  Isoprekinamycin Is a Diazobenzo[a]fluorene Rather than a Diazobenzo[b]fluorene , 2000 .

[28]  S. Ōmura,et al.  Structure of Kinamycin C, and the Structural Relationship among Kinamycin A, B, C, and D , 1971 .

[29]  W. Overend,et al.  675. Reactions at position 1 of carbohydrates. Part III. The acid-catalysed hydrolysis of glycosides , 1962 .

[30]  S. Gould,et al.  Origin of the cyanamide carbon of the kinamycin antibiotics , 1988 .

[31]  A. Myers,et al.  A general procedure for the esterification of carboxylic acids with diazoalkanes generated in situ by the oxidation of N-tert-butyldimethylsilylhydrazones with (difluoroiodo)benzene. , 2004, Journal of the American Chemical Society.

[32]  S. Herzon,et al.  Development of a convergent entry to the diazofluorene antitumor antibiotics: enantioselective synthesis of kinamycin F. , 2010, Journal of the American Chemical Society.

[33]  G. Dmitrienko,et al.  Diazo group electrophilicity in kinamycins and lomaiviticin A: potential insights into the molecular mechanism of antibacterial and antitumor activity. , 2002, Journal of the American Chemical Society.

[34]  S. Macdonald,et al.  Asymmetric Epoxidation of Chalcones with Chirally Modified Lithium and Magnesium tert‐Butyl Peroxides , 1997 .

[35]  J. Young,et al.  FL-120A-D', new products related to kinamycin from Streptomyces chattanoogensis subsp. taitungensis subsp. nov. II. Isolation and structure determination. , 1994, The Journal of antibiotics.

[36]  S. Danishefsky,et al.  Synthesis of two useful, enantiomerically pure derivatives of (S)-4-hydroxy-2-cyclohexenone , 1989 .

[37]  J. Carney,et al.  Kinamycin Biosynthesis. Synthesis, Isolation, and Incorporation of Stealthin C, an Aminobenzo[b]fluorene. , 1997, The Journal of organic chemistry.

[38]  Hong Liang,et al.  Mechanism of the cytotoxicity of the diazoparaquinone antitumor antibiotic kinamycin F. , 2007, Free radical biology & medicine.

[39]  Takuya Kumamoto,et al.  Synthetic Studies on Kinamycin Antibiotics: Synthesis of a Trioxygenated Benz[f]indenone and its Diels–Alder Reaction to a Kinamycin Skeleton , 2002 .

[40]  G. Sulikowski,et al.  One-Pot Synthesis of 2-Deoxy-β-oligosaccharides , 2001 .

[41]  S. Ōmura,et al.  Avermectins, New Family of Potent Anthelmintic Agents: Producing Organism and Fermentation , 1979, Antimicrobial Agents and Chemotherapy.

[42]  G. Sulikowski,et al.  Synthesis of the Hexasaccharide Fragment of Landomycin A: Application of Glycosyl Tetrazoles and Phosphites in the Synthesis of a Deoxyoligosaccharide , 1998 .

[43]  Aleksandra Baranczak,et al.  Stereocontrolled assembly of the C3/C3' dideoxy core of lomaiviticin A/B and congeners. , 2008, Organic letters.

[44]  H. W. Moore Bioactivation as a model for drug design bioreductive alkylation. , 1977, Science.

[45]  S. Gould,et al.  Kinamycin biosytheesis. Synthesis, detection, and incorporation of kinobscurinone, a benzo[b]fluorenone , 1995 .

[46]  S. Kimura,et al.  Syntheses of Prekinamycin and a Tetracyclic Quinone from Common Synthetic Intermediates , 2011 .

[47]  G. Catelani,et al.  A highly diastereoselective synthesis of dl-oleandrose , 1982 .

[48]  Wurz,et al.  Trifluoromethanesulfonyl azide: A powerful reagent for the preparation of alpha-nitro-alpha-diazocarbonyl derivatives , 2000, The Journal of organic chemistry.

[49]  N. Taylor,et al.  A biogenetically-inspired synthesis of a ring-D model of kinamycin F: insights into the conformation of ring D. , 2008, Organic letters.

[50]  G. Kraus,et al.  An annelation route to quionones , 1978 .

[51]  F. Hauser,et al.  New synthetic methods for the regioselective annelation of aromatic rings: 1-hydroxy-2,3-disubstituted naphthalenes and 1,4-dihydroxy-2,3-disubstituted naphthalenes , 1978 .

[52]  M. Shair,et al.  Enantioselective synthesis of the central ring system of lomaiviticin A in the form of an unusually stable cyclic hydrate. , 2008, Angewandte Chemie.

[53]  J. Porco,et al.  Dearomatization strategies in the synthesis of complex natural products. , 2011, Angewandte Chemie.

[54]  V. B. Birman,et al.  Benzo[b]fluorenes via indanone dianion annulation: a short synthesis of prekinamycin. , 2007, Organic letters.

[55]  D. Mal,et al.  The first approach to kinamycin antibiotics: Synthesis of kinafluorenone scaffold , 1996 .

[56]  K. Sharpless,et al.  Electrophilic and nucleophilic organoselenium reagents. New routes to .alpha.,.beta.-unsaturated carbonyl compounds , 1973 .

[57]  M. Shair,et al.  Synthesis of the N-(tert-butyloxycarbonyl)-O-triisopropylsilyl-D-pyrrolosamine Glycal of Lomaiviticin A & B via Epimerization of L-Threonine. , 2010, Tetrahedron letters.

[58]  S. Ōmura,et al.  A new antibiotic, kinamycin. , 1970, The Journal of antibiotics.

[59]  P. Callery,et al.  A convenient synthesis of quinones from hydroquinone dimethyl ethers. Oxidative demethylation with ceric ammonijm nitrate. , 1976, The Journal of organic chemistry.

[60]  K. Sharpless,et al.  Ti(O-i-Pr)4-mediated nucleophilic openings of 2,3-epoxy alcohols. A mild procedure for regioselective ring-opening , 1985 .

[61]  Xiaoguang Lei,et al.  Total synthesis of the diazobenzofluorene antibiotic (-)-kinamycin C1. , 2006, Journal of the American Chemical Society.

[62]  Gary C. M. Lee,et al.  The chemistry of vicinal tricarbonyls. A new synthesis of substituted furans , 1994 .

[63]  Okanya J. Kokas,et al.  Synthesis of indoles via palladium[0]-mediated Ullmann cross-coupling of o-halonitroarenes with alpha-halo-enones or -enals. , 2003, Organic letters.

[64]  G. Molander,et al.  Lanthanides in organic synthesis. 2. Reduction of .alpha.-heterosubstituted ketones , 1986 .

[65]  M. Shair,et al.  Enantioselective synthesis of the lomaiviticin aglycon full carbon skeleton reveals remarkable remote substituent effects during the dimerization event. , 2010, Chemistry.

[66]  J. Porco,et al.  Total synthesis of the quinone epoxide dimer (+)-torreyanic acid: application of a biomimetic oxidation/electrocyclization/Diels-Alder dimerization cascade. , 2003, Journal of the American Chemical Society.

[67]  A. Echavarren,et al.  Synthesis of the benzo[b]carbazoloquinone with the structure proposed for prekinamycin , 1993 .

[68]  T. Imamoto,et al.  Reactions of carbonyl compounds with Grignard reagents in the presence of cerium chloride , 1989 .

[69]  V. Kulkarni,et al.  A mild general method for the synthesis of ∝-2-deoxy-disaccharides: Synthesis of L-oleandrosyl-L-oleandrose from D-glucose , 1989 .

[70]  K. Nicolaou,et al.  Total synthesis of kinamycins C, F, and J. , 2007, Journal of the American Chemical Society.

[71]  Omar M Khdour,et al.  Quinone methide chemistry of prekinamycins: 13C-labeling, spectral global fitting and in vitro studies. , 2009, Organic & biomolecular chemistry.

[72]  J. Grunwell,et al.  Regiospecific synthesis of bromojuglone derivatives , 1981 .

[73]  Seong-Tshool Hong,et al.  Seongomycin: A new sulfur-containing benzo[b]fluorene derived from genes clustered with those for kinamycin biosynthesis , 1997 .

[74]  Y. Hu,et al.  Exploring chemical diversity of epoxyquinoid natural products: synthesis and biological activity of (-)-jesterone and related molecules. , 2001, Organic letters.

[75]  R. Hong,et al.  A new reagent system for modified Ullmann-type coupling reactions: NiCl(2)(PPh(3))(2)/PPh(3)/Zn/NaH/toluene. , 2001, The Journal of organic chemistry.

[76]  J. Read de Alaniz,et al.  A highly enantioselective catalytic intramolecular Stetter reaction. , 2002, Journal of the American Chemical Society.

[77]  K. Ahn,et al.  Ate complex from diisobutylaluminum hydride and n-butyllithium as a powerful and selective reducing agent for the reduction of selected organic compounds containing various functional groups , 1984 .

[78]  G. Molander Application of lanthanide reagents in organic synthesis , 1992 .

[79]  S. Gould Biosynthesis of the Kinamycins. , 1997, Chemical reviews.

[80]  K. Shin‐ya,et al.  Structures of stealthins A and B, new free radical scavengers of microbial origin , 1992 .

[81]  P. G. Wuts,et al.  Total synthesis of oleandrose and the avermectin disaccharide, benzyl .alpha.-L-oleandrosyl-.alpha.-L-4-acetoxyoleandroside , 1983 .

[82]  D. R. Lloyd,et al.  Study of the metal-oxygen bond in simple tris-chelate complexes by He(I) photoelectron spectroscopy , 1972 .

[83]  Davidr . Evans,et al.  Asymmetric Diels-Alder cycloaddition reactions with chiral .alpha.,.beta.-unsaturated N-acyloxazolidinones , 1988 .

[84]  G. Posner,et al.  A convenient, one-step, high-yield replacement of an anomeric hydroxyl group by a fluorine atom using dast. Preparation of glycosyl fluorides. , 1985 .

[85]  D. Arya,et al.  DNA Cleaving Ability of 9-Diazofluorenes and Diaryl Diazomethanes: Implications for the Mode of Action of the Kinamycin Antibiotics , 1995 .

[86]  K. S. Feldman,et al.  Studies on the mechanism of action of prekinamycin, a member of the diazoparaquinone family of natural products: evidence for both sp2 radical and orthoquinonemethide intermediates. , 2006, Journal of the American Chemical Society.

[87]  S. Ngai,et al.  N-cyanoindoles and n-cyanoindole-4,7-diones: Construction of a bc ring synthon for the kinamycins , 1990 .

[88]  S. Ōmura,et al.  A new antibiotic, kinamycin: fermentation, isolation, purification and properties. , 1971, The Journal of antibiotics.

[89]  Scott T. Harrison,et al.  Stereocontrolled synthesis of model core systems of lomaiviticins A and B. , 2006, Angewandte Chemie.

[90]  Takuya Kumamoto,et al.  Total synthesis of (±)-methyl-kinamycin C , 2007 .

[91]  K. Wilson,et al.  Avermectins, New Family of Potent Anthelmintic Agents: Isolation and Chromatographic Properties , 1979, Antimicrobial Agents and Chemotherapy.

[92]  J. Marco-Contelles,et al.  Naturally Occurring Diazo Compounds: The Kinamycins , 2003 .

[93]  J. Soodsma,et al.  Kinamycin acetyltransferase I from Streptomyces murayamaensis, an apparently large, membrane-associated enzyme. , 1996, Bioorganic & medicinal chemistry.

[94]  H. Naganawa,et al.  3-O-isobutyrylkinamycin C and 4-deacetyl-4-O-isobutyrylkinamycin C, new antibiotics produced by a Saccharothrix species. , 1989, The Journal of antibiotics.

[95]  N. Taylor,et al.  Total synthesis of isoprekinamycin: structural evidence for enhanced diazonium ion character and growth inhibitory activity toward cancer cells. , 2007, Organic letters.

[96]  S. Ley,et al.  An Efficient Three-Step Synthesis of L-(-)-Oleandrose from (S)-(-)-Methyl Lactate , 1990 .

[97]  C. Melander,et al.  Analysis of kinamycin D-mediated DNA cleavage , 2010 .

[98]  V. Box Some Consequences of Lone Pair Interactions in the Chemistry of Monosaccharides , 1982 .

[99]  W. Zeng,et al.  Mimicking the biological activity of diazobenzo[b]fluorene natural products with electronically tuned diazofluorene analogs. , 2006, Bioorganic & medicinal chemistry letters.

[100]  J. Read de Alaniz,et al.  An efficient synthesis of achiral and chiral 1,2,4-triazolium salts: bench stable precursors for N-heterocyclic carbenes. , 2005, The Journal of organic chemistry.

[101]  Davidr . Evans,et al.  Diastereoselective magnesium halide-catalyzed anti-aldol reactions of chiral N-acyloxazolidinones. , 2002, Journal of the American Chemical Society.

[102]  K. B. Sharpless,et al.  Titanium isopropoxide-mediated nucleophilic openings of 2,3-epoxy alcohols. A mild procedure for regioselective ring-opening , 1985 .

[103]  M. Waring,et al.  Directed dihydroxylation of cyclic allylic alcohols and trichloroacetamides using OsO4/TMEDA. , 2002, The Journal of organic chemistry.

[104]  T. Reichstein,et al.  Synthese der L‐Oleandrose. Desoxyzucker, 21. Mitteilung , 1948 .

[105]  C. Eaborn,et al.  Synthesis of organotrialkylstannanes. The reaction between organic halides and hexaalkyldistannanes in the presence of palladium complexes , 1981 .

[106]  G. Hesler,et al.  Pyrrolosporin A, a new antitumor antibiotic from Micromonospora sp. C39217-R109-7. I. Taxonomy of producing organism, fermentation and biological activity. , 1996, The Journal of antibiotics.

[107]  R. Shoemaker The NCI60 human tumour cell line anticancer drug screen , 2006, Nature Reviews Cancer.

[108]  H. Reich,et al.  Organoselenium chemistry. .alpha.-Phenylseleno carbonyl compounds as precursors for .alpha.,.beta.-unsaturated ketones and esters , 1973 .

[109]  C. Holzapfel,et al.  Alternative Syntheses of L-(-)-Oleandrose from L-Rhamnose1 Preparation of Glycals , 1992 .

[110]  S. Gould,et al.  Revised Structures for the Kinamycin Antibiotics - 5-Diazobenzo(B)Fluorenes Rather Than Benzo(B)Carbazole Cyanamides , 1994 .

[111]  Joseph P. Adams,et al.  Direct α-iodination of cycloalkenones , 1992 .

[112]  H. Lin,et al.  FL-120A-D', new products related to kinamycin from Streptomyces chattanoogensis subsp. taitungensis subsp. nov. I. Taxonomy, fermentation and biological properties. , 1994, The Journal of antibiotics.

[113]  A. Zeeck,et al.  Metabolic products of microorganisms, 271. Momofulvenone A and B, new benzo[b]fluorene quinones from Streptomyces , 1995 .

[114]  N. Taylor,et al.  The Kinamycins are Diazofluorenes and Not Cyanocarbazoles , 1994 .

[115]  E. Pace,et al.  Total synthesis of the NF-kappa B inhibitor (-)-cycloepoxydon: utilization of tartrate-mediated nucleophilic epoxidation. , 2001, Journal of the American Chemical Society.

[116]  P. Ravikumar,et al.  Synthesis of the fully glycosylated cyclohexenone core of lomaiviticin A. , 2009, Organic letters.

[117]  T. Lowary,et al.  Recent advances in the synthesis of 2-deoxy-glycosides. , 2009, Carbohydrate research.

[118]  Christopher C. Nawrat,et al.  Natural products containing a diazo group. , 2011, Natural product reports.