3D Printing: Applications in evolution and ecology

Abstract In the commercial and medical sectors, 3D printing is delivering on its promise to enable a revolution. However, in the fields of Ecology and Evolution we are only on the brink of embracing the advantages that 3D printing can offer. Here we discuss examples where the process has enabled researchers to develop new techniques, work with novel species, and to enhance the impact of outreach activities. Our aim is to showcase the potential that 3D printing offers in terms of improved experimental techniques, greater flexibility, reduced costs and promoting open science, while also discussing its limitations. By taking a general overview of studies using the technique from fields across the broad range of Ecology and Evolution, we show the flexibility of 3D printing technology and aim to inspire the next generation of discoveries.

[1]  Detecting emerald ash borers (Agrilus planipennis) using branch traps baited with 3D-printed beetle decoys , 2015, Journal of Pest Science.

[2]  C. Willermet.  Biological Anthropology in 2015: Open Access, Biocultural Interactions, and Social Change , 2016 .

[3]  Ryan B. Wicker,et al.  Fabrication of Metal and Alloy Components by Additive Manufacturing: Examples of 3D Materials Science , 2012 .

[4]  M. Koehl,et al.  Using physical models to study the gliding performance of extinct animals. , 2011, Integrative and comparative biology.

[5]  Michael P. Hughes,et al.  Microengineering in Biotechnology , 2010, Methods in Molecular Biology.

[6]  Matthew B Hoy.  3D Printing: Making Things at the Library , 2013, Medical reference services quarterly.

[7]  Joshua M. Pearce,et al.  Open-Source 3D-Printable Optics Equipment , 2013, PloS one.

[8]  Stamatios Polydoras,et al.  Digitizing, modelling and 3D printing of skeletal digital models of Palaeoloxodon tiliensis (Tilos, Dodecanese, Greece) , 2015 .

[9]  Thomas Scheper,et al.  3D‐printed individual labware in biosciences by rapid prototyping: A proof of principle , 2015 .

[10]  Benedict D. Chivers,et al.  Chamber music: an unusual Helmholtz resonator for song amplification in a Neotropical bush-cricket (Orthoptera, Tettigoniidae) , 2017, Journal of Experimental Biology.

[11]  M. Walker,et al.  Printing : Applications in evolution and ecology , 2019 .

[12]  D. Furbish,et al.  Hydrodynamic strategies in the morphological evolution of spinose planktonic foraminifera , 1997 .

[13]  J. Endler.  CONVERGENT AND DIVERGENT EFFECTS OF NATURAL SELECTION ON COLOR PATTERNS IN TWO FISH FAUNAS , 1982, Evolution; international journal of organic evolution.

[14]  Yong Chen,et al.  3D printing of soft lithography mold for rapid production of polydimethylsiloxane-based microfluidic devices for cell stimulation with concentration gradients , 2015, Biomedical microdevices.

[15]  T. Daniel,et al.  Shape matters: corolla curvature improves nectar discovery in the hawkmoth Manduca sexta. , 2015, Functional ecology.

[16]  Javeed Shaikh Mohammed,et al.  Applications of 3D printing technologies in oceanography , 2016 .

[17]  R. Klaassen,et al.  Testing an attachment method for solar-powered tracking devices on a long-distance migrating shorebird , 2015, Journal of Ornithology.

[18]  P. Bártolo,et al.  The Lapedo Child Reborn: Contributions of CT Scanning and Rapid Prototyping for an Upper Paleolithic Infant Burial and Face Reconstruction. The Case of Lagar Velho Interpretation Centre, Leiria, Portugal , 2007 .

[19]  Nicholas Herbert,et al.  A preliminary investigation into the development of 3-D printing of prosthetic sockets. , 2005, Journal of rehabilitation research and development.

[20]  J. Padisák,et al.  Sinking properties of some phytoplankton shapes and the relation of form resistance to morphological diversity of plankton – an experimental study , 2003, Hydrobiologia.

[21]  Chee Meng Benjamin Ho,et al.  3D printed microfluidics for biological applications. , 2015, Lab on a chip.

[22]  M. Cummings,et al.  A multifunctional warning signal behaves as an agonistic status signal in a poison frog , 2015 .

[23]  J. Thomson,et al.  Flowers with caffeinated nectar receive more pollination , 2015, Arthropod-Plant Interactions.

[24]  Robert van Liere,et al.  Tangible props for scientific visualization: concept, requirements, application , 2009, Virtual Reality.

[25]  P. A. Svensson,et al.  Carotenoid-based signals in behavioural ecology : a review , 2011 .

[26]  Michael A. Kolitsky.  3D Printed Tactile Learning Objects: Proof of Concept Full Article , 2014 .

[27]  A. Borland,et al.  Caffeine in Floral Nectar Enhances a Pollinator's Memory of Reward , 2013, Science.

[28]  Arthur J. Olson,et al.  3D Printing of Molecular Models , 2016, The Journal of biocommunication.

[29]  L. S. Adler.  The ecological significance of toxic nectar , 2000 .

[30]  Wei Shi,et al.  Assessing and Reducing the Toxicity of 3D-Printed Parts , 2016 .

[31]  Alexander L. Davis,et al.  Expert-guided optimization for 3D printing of soft and liquid materials , 2018, PloS one.

[32]  Frederik L. Giesel,et al.  3D printing based on imaging data: review of medical applications , 2010, International Journal of Computer Assisted Radiology and Surgery.

[33]  P. Mumby,et al.  Vulnerability of the Great Barrier Reef to climate change and local pressures , 2018, Global change biology.

[34]  Eize J. Stamhuis,et al.  Basics and principles of particle image velocimetry (PIV) for mapping biogenic and biologically relevant flows , 2006, Aquatic Ecology.

[35]  Philip J. Kitson,et al.  Configurable 3D-Printed millifluidic and microfluidic 'lab on a chip' reactionware devices. , 2012, Lab on a chip.

[36]  D. Evangelista,et al.  Bio-inspired design of ice-retardant devices based on benthic marine invertebrates: the effect of surface texture , 2014, bioRxiv.

[37]  Michael J. Angilletta,et al.  How to avoid errors when quantifying thermal environments , 2014 .

[38]  Imran A. Rahman,et al.  Virtual Fossils: a New Resource for Science Communication in Paleontology , 2012, Evolution: Education and Outreach.

[39]  H. Mallison.  Digitizing Methods for Paleontology: Applications, Benefits and Limitations , 2011 .

[40]  P. Waters.  A review of the moulding and casting materials and techniques in use at the palaeontology laboratory, British museum (natural history) , 1983 .

[41]  J. Shear,et al.  3D printing of microscopic bacterial communities , 2013, Proceedings of the National Academy of Sciences.

[42]  Analía V. López,et al.  Using 3D printed eggs to examine the egg-rejection behaviour of wild birds , 2015, PeerJ.

[43]  Sarah B. Williams,et al.  “Let's Get Physical”: Advantages of a physical model over 3D computer models and textbooks in learning imaging anatomy , 2013, Anatomical sciences education.

[44]  G. Lauder,et al.  Biomimetic shark skin: design, fabrication and hydrodynamic function , 2014, Journal of Experimental Biology.

[45]  Gordon M. Shepherd,et al.  3D-printer visualization of neuron models , 2015, Front. Neuroinform..

[46]  Tim Gernat,et al.  Virtual skeletons: using a structured light scanner to create a 3D faunal comparative collection , 2009 .

[47]  W. Baumgartner,et al.  Adaptation to life in aeolian sand: how the sandfish lizard, Scincus scincus, prevents sand particles from entering its lungs , 2016, Journal of Experimental Biology.

[48]  Jie Xu,et al.  3D printing: an emerging tool for novel microfluidics and lab-on-a-chip applications , 2016, Microfluidics and Nanofluidics.

[49]  Wai Yee Yeong,et al.  Laser and electron‐beam powder‐bed additive manufacturing of metallic implants: A review on processes, materials and designs , 2016, Journal of orthopaedic research : official publication of the Orthopaedic Research Society.

[50]  Anna Frohnwieser,et al.  Using robots to understand animal cognition. , 2015, Journal of the experimental analysis of behavior.

[51]  George V Lauder,et al.  The hydrodynamic function of shark skin and two biomimetic applications , 2012, Journal of Experimental Biology.

[52]  Three legs good, four legs better: making a quagga whole again with 3D printing , 2016 .

[53]  P. D'urso,et al.  Biomodelling of skull base tumours , 1999, Journal of Clinical Neuroscience.

[54]  James C. Weaver,et al.  Structure, biomimetics, and fluid dynamics of fish skin surfaces * , 2016 .

[55]  Tristan Lawton,et al.  The Elgin marvel: using magnetic resonance imaging to look at a moldic fossil from the Permian of Elgin, Scotland, UK. , 2004, Magnetic resonance imaging.

[56]  P. Claes,et al.  Prehensile and non-prehensile tails among syngnathid fishes: what's the difference? , 2017, Zoology.

[57]  Adir Cohen,et al.  Mandibular reconstruction using stereolithographic 3-dimensional printing modeling technology. , 2009, Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics.

[58]  Guangji Li,et al.  Preparation, anti-biofouling and drag-reduction properties of a biomimetic shark skin surface , 2016, Biology Open.

[59]  Theodore L. Gerstle,et al.  A Plastic Surgery Application in Evolution: Three-Dimensional Printing , 2014, Plastic and reconstructive surgery.

[60]  Michael C. McAlpine,et al.  3D Printed Bionic Ears , 2013, Nano letters.

[61]  J. Orange,et al.  Three-Dimensional Printing of Super-Resolution Microscopy Images , 2015, Microscopy Today.

[62]  Roman Stocker,et al.  Microfluidics for bacterial chemotaxis. , 2010, Integrative biology : quantitative biosciences from nano to macro.

[63]  Matthew G. Johnson,et al.  Aposematic signals in North American black widows are more conspicuous to predators than to prey , 2016 .

[64]  Shady Gawad,et al.  The application of microfluidics in biology. , 2010, Methods in molecular biology.

[65]  Takeshi Kaneko,et al.  Enlarged Skeleton Models of Plankton for Tactile Teaching , 2010, ICCHP.

[66]  B. Duan,et al.  3D bioprinting of heterogeneous aortic valve conduits with alginate/gelatin hydrogels. , 2013, Journal of biomedical materials research. Part A.

[67]  Christopher Koehler,et al.  3D reconstruction and analysis of wing deformation in free-flying dragonflies , 2012, Journal of Experimental Biology.

[68]  Alireza Ahmadian Yazdi,et al.  3D printing: an emerging tool for novel microfluidics and lab-on-a-chip applications , 2016, Microfluidics and Nanofluidics.

[69]  Bastian E. Rapp,et al.  Let there be chip—towards rapid prototyping of microfluidic devices: one-step manufacturing processes , 2011 .

[70]  G. K. Morris,et al.  Covert stridulation: Novel sound generation by a South American Katydid , 1995, Naturwissenschaften.

[71]  Liang Li,et al.  The pumping lid: investigating multi-material 3D printing for equipment-free, programmable generation of positive and negative pressures for microfluidic applications. , 2014, Lab on a chip.

[72]  Gabriel D. Weymouth,et al.  The four-flipper swimming method of plesiosaurs enabled efficient and effective locomotion , 2017, Proceedings of the Royal Society B: Biological Sciences.

[73]  M. Koehl,et al.  Physical modelling in biomechanics. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[74]  R. Raguso,et al.  Disentangling visual and olfactory signals in mushroom-mimicking Dracula orchids using realistic three-dimensional printed flowers. , 2016, The New phytologist.

[75]  Anna Pyayt,et al.  Tactile Visualization and 3D Printing for Education , 2019, Encyclopedia of Computer Graphics and Games.

[76]  S. Vogel.  Current-induced flow through the sponge, Halichondria. , 1974, The Biological bulletin.

[77]  Joshua M. Pearce.  Introduction to Open-Source Hardware for Science , 2014 .

[78]  H. Fischer,et al.  Direct Inkjet Printing of Dental Prostheses Made of Zirconia , 2009, Journal of dental research.

[79]  Y. Lagadeuc,et al.  Turbulence effects on phytoplankton morphofunctional traits selection , 2015 .

[80]  Gábor Harsányi,et al.  3D Rapid Prototyping Technology (RPT) as a powerful tool in microfluidic development , 2010 .

[81]  Charles M Watson,et al.  Three dimensional printing as an effective method of producing anatomically accurate models for studies in thermal ecology. , 2015, Journal of thermal biology.

[82]  M. Benton,et al.  The use of flexible synthetic rubbers for casts of complex fossils from natural moulds , 1981, Geological Magazine.

[83]  Kaufui Wong,et al.  A Review of Additive Manufacturing , 2012 .

[84]  Lucia L. Prieto-Godino,et al.  Open Labware: 3-D Printing Your Own Lab Equipment , 2015, PLoS biology.

[85]  Jason E. Bara,et al.  Tangible visualization of molecular dynamics simulations using 3-D printing , 2015 .

[86]  N. A. Ryan,et al.  A trade-off between natural and sexual selection underlies diversification of a sexual signal , 2015 .

[87]  Wojciech Matusik,et al.  MultiFab , 2015, ACM Trans. Graph..

[88]  M. Raath,et al.  A non-destructive investigation of the skull of the small theropod dinosaur, Coelophysis rhodesiensis, using CT scans and rapid prototyping , 2004 .

[89]  M. Purnell.  CASTING, REPLICATION, AND ANAGLYPH STEREO IMAGING OF MICROSCOPIC DETAIL IN FOSSILS, WITH EXAMPLES FROM CONODONTS AND OTHER JAWLESS VERTEBRATES , 2003 .

[90]  Barry Berman,et al.  3D printing: the new industrial revolution , 2012, IEEE Engineering Management Review.

[91]  J. Ragle,et al.  IUCN Red List of Threatened Species , 2010 .

[92]  Marc A. Meyers,et al.  Why the seahorse tail is square , 2015, Science.

[93]  B. Lai,et al.  The Bionanoprobe: Synchrotron-Based Hard X-ray Fluorescence Microscopy for 2D/3D Trace Element Mapping , 2015, Microscopy Today.

[94]  Seok Jae Lee,et al.  3D printed modules for integrated microfluidic devices , 2014 .