Phylogeny and conservation of plant U2A/U2A’, a core splicing component in U2 spliceosomal complex

[1]  Alisdair R Fernie,et al.  SWATH-MS-Based Proteomics: Strategies and Applications in Plants. , 2020, Trends in biotechnology.

[2]  Bei Gao,et al.  PlantSPEAD: a web resource towards comparatively analysing stress‐responsive expression of splicing‐related proteins in plant , 2020, Plant biotechnology journal.

[3]  Moxian Chen,et al.  Systematic characterization of the branch point binding protein, splicing factor 1, gene family in plant development and stress responses , 2020, BMC Plant Biology.

[4]  Bei Gao,et al.  Comprehensive transcriptome and proteome analyses reveal a novel sodium chloride responsive gene network in maize seed tissues during germination. , 2020, Plant, cell & environment.

[5]  Moxian Chen,et al.  Alternative splicing and its regulatory role in woody plants. , 2020, Tree physiology.

[6]  Bei Gao,et al.  Phylogenetic comparison of plant U1-70K gene family, central spliceosomal proteins on 5' splice site determination, in response to developmental cues and stress conditions. , 2020, The Plant journal : for cell and molecular biology.

[7]  A. Fernie,et al.  Full-Length Transcript-Based Proteogenomics of Rice Improves Its Genome and Proteome Annotation1 , 2019, Plant Physiology.

[8]  A. Hoskins,et al.  Structural and functional modularity of the U2 snRNP in pre-mRNA splicing , 2019, Critical reviews in biochemistry and molecular biology.

[9]  Yigong Shi,et al.  Molecular Mechanisms of pre-mRNA Splicing through Structural Biology of the Spliceosome. , 2019, Cold Spring Harbor perspectives in biology.

[10]  Yigong Shi,et al.  Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching , 2018, Cell.

[11]  Bei Gao,et al.  Alternative splicing and translation play important roles in hypoxic germination in rice , 2018, Journal of experimental botany.

[12]  Yigong Shi,et al.  Structures of the fully assembled Saccharomyces cerevisiae spliceosome before activation , 2018, Science.

[13]  K. Hall,et al.  Molecular principles underlying dual RNA specificity in the Drosophila SNF protein , 2018, Nature Communications.

[14]  Torsten Schwede,et al.  SWISS-MODEL: homology modelling of protein structures and complexes , 2018, Nucleic Acids Res..

[15]  K. Nagai,et al.  Prespliceosome structure provides insights into spliceosome assembly and regulation , 2018, Nature.

[16]  Shuguang Yuan,et al.  Using PyMOL as a platform for computational drug design , 2017 .

[17]  Itay Mayrose,et al.  ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules , 2016, Nucleic Acids Res..

[18]  Zhibin Hu,et al.  Major spliceosome defects cause male infertility and are associated with nonobstructive azoospermia in humans , 2016, Proceedings of the National Academy of Sciences.

[19]  K. Hall,et al.  Binding Affinity and Cooperativity Control U2B″/snRNA/U2A′ RNP Formation , 2014, Biochemistry.

[20]  A. Gregory Matera,et al.  A day in the life of the spliceosome , 2014, Nature Reviews Molecular Cell Biology.

[21]  K. Hall,et al.  Resurrection of an Urbilaterian U1A/U2B″/SNF protein. , 2013, Journal of molecular biology.

[22]  T. Cooper,et al.  Pre-mRNA splicing in disease and therapeutics. , 2012, Trends in molecular medicine.

[23]  R. Padgett New connections between splicing and human disease. , 2012, Trends in genetics : TIG.

[24]  K. Hall,et al.  Human U2B″ protein binding to snRNA stemloops. , 2011, Biophysical chemistry.

[25]  C. Will,et al.  Spliceosome structure and function. , 2011, Cold Spring Harbor perspectives in biology.

[26]  C. Will,et al.  The Spliceosome: Design Principles of a Dynamic RNP Machine , 2009, Cell.

[27]  Kinji Ohno,et al.  Human branch point consensus sequence is yUnAy , 2008, Nucleic acids research.

[28]  T. Blumenthal,et al.  Functional redundancy of worm spliceosomal proteins U1A and U2B″ , 2007, Proceedings of the National Academy of Sciences.

[29]  B. Séraphin,et al.  Proteomic analysis identifies a new complex required for nuclear pre‐mRNA retention and splicing , 2004, The EMBO journal.

[30]  Abhijit A. Patel,et al.  Splicing double: insights from the second spliceosome , 2003, Nature Reviews Molecular Cell Biology.

[31]  H. Salz,et al.  The Drosophila U2 snRNP protein U2A' has an essential function that is SNF/U2B" independent. , 2001, Nucleic acids research.

[32]  M. Lundin,et al.  Gene Structure of the U2 snRNP-Specific A′ Protein Gene from Salmo salar: Alternative Transcripts Observed , 2000, Marine Biotechnology.

[33]  M. Bollen,et al.  A capping domain for LRR protein interaction modules , 1999, FEBS letters.

[34]  B. Séraphin,et al.  The yeast U2A′/U2B″ complex is required for pre‐spliceosome formation , 1998, The EMBO journal.

[35]  J. Belasco,et al.  Target discrimination by RNA-binding proteins: role of the ancillary protein U2A' and a critical leucine residue in differentiating the RNA-binding specificity of spliceosomal proteins U1A and U2B". , 1998, RNA.

[36]  Philip R. Evans,et al.  Crystal structure of the spliceosomal U2B″–U2A′ protein complex bound to a fragment of U2 small nuclear RNA , 1998, Nature.

[37]  J. Brown,et al.  Molecular characterization of the spliceosomal proteins U1A and U2B″ from higher plants. , 1995, The EMBO journal.

[38]  P. Legrain,et al.  Evidence that the 60-kDa protein of 17S U2 small nuclear ribonucleoprotein is immunologically and functionally related to the yeast PRP9 splicing factor and is required for the efficient formation of prespliceosomes. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[39]  J. Keene,et al.  Leucine periodicity of U2 small nuclear ribonucleoprotein particle (snRNP) A' protein is implicated in snRNP assembly via protein-protein interactions , 1991, Molecular and cellular biology.

[40]  D. Scherly,et al.  The U2B″ RNP motif as a site of protein‐protein interaction. , 1990, The EMBO journal.

[41]  P. Sharp,et al.  Interactions between small nuclear ribonucleoprotein particles in formation of spliceosomes , 1987, Cell.

[42]  R. Lührmann,et al.  Purification of the individual snRNPs U1, U2, U5 and U4/U6 from HeLa cells and characterization of their protein constituents. , 1986, The EMBO journal.

[43]  J. Steitz,et al.  U2 as well as U1 small nuclear ribonucleoproteins are involved in premessenger RNA splicing , 1985, Cell.

[44]  W. Noon,et al.  Intron splicing: a conserved internal signal in introns of animal pre-mRNAs. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[45]  M. Rosbash,et al.  Evidence for the biochemical role of an internal sequence in yeast nuclear mRNA introns: Implications for U1 RNA and metazoan mRNA splicing , 1983, Cell.

[46]  Stephen M. Mount,et al.  Are snRNPs involved in splicing? , 1980, Nature.

[47]  M. Ladomery,et al.  Pre-mRNA Splicing and Disease , 2016 .

[48]  H. Salz,et al.  The Drosophila U 2 snRNP protein U 2 A ′ has an essential function that is SNF / U 2 B ′′ independent , 2001 .

[49]  B. Séraphin,et al.  Drosophila SNF/D25 combines the functions of the two snRNP proteins U1A and U2B' that are encoded separately in human, potato, and yeast. , 1996, RNA.

[50]  Phillip A. Sharp,et al.  13 Splicing of Precursors to mRNA by the Spliceosome , 1993 .