Accurate annotation of metagenomic data without species-level references
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Yadong Wang | Bo Liu | S.M. Yiu | Haobin Yao | T.W. Lam | H.F. Ting | Yadong Wang | H. Ting | T. Lam | S. Yiu | Bo Liu | Haobin Yao
[1] Pradeep Ravikumar,et al. QUIC: quadratic approximation for sparse inverse covariance estimation , 2014, J. Mach. Learn. Res..
[2] Siu-Ming Yiu,et al. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning , 2014, BMC Genomics.
[3] Gail L. Rosen,et al. NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads , 2010, Bioinform..
[4] J. Handelsman,et al. Metagenomics: genomic analysis of microbial communities. , 2004, Annual review of genetics.
[5] Maya Gokhale,et al. Scalable metagenomic taxonomy classification using a reference genome database , 2013, Bioinform..
[6] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[7] Jean-Philippe Vert,et al. Large-scale machine learning for metagenomics sequence classification , 2015, Bioinform..
[8] Alexander F. Auch,et al. MEGAN analysis of metagenomic data. , 2007, Genome research.
[9] Chongle Pan,et al. Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance , 2014, Bioinform..
[10] Derrick E. Wood,et al. Kraken: ultrafast metagenomic sequence classification using exact alignments , 2014, Genome Biology.
[11] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[12] S. Salzberg,et al. Phymm and PhymmBL: Metagenomic Phylogenetic Classification with Interpolated Markov Models , 2009, Nature Methods.
[13] Yu-Wei Wu,et al. A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples , 2010, RECOMB.
[14] M. Yuan,et al. Model selection and estimation in the Gaussian graphical model , 2007 .
[15] Léon Bottou,et al. Large-Scale Machine Learning with Stochastic Gradient Descent , 2010, COMPSTAT.
[16] Siu-Ming Yiu,et al. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth , 2012, Bioinform..
[17] Siu-Ming Yiu,et al. MetaCluster: unsupervised binning of environmental genomic fragments and taxonomic annotation , 2010, BCB '10.
[18] Anders F. Andersson,et al. Binning metagenomic contigs by coverage and composition , 2014, Nature Methods.
[19] Nanny Wermuth,et al. Multivariate Dependencies: Models, Analysis and Interpretation , 1996 .