The long journey towards standards for engineering biosystems

Synthetic biology needs to adopt sound scientific and industry‐like standards in order to achieve its ambitious goals of efficient and accurate engineering of biological systems.

[1]  Thomas E Gorochowski,et al.  Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability. , 2015, ACS synthetic biology.

[2]  Jacob Beal,et al.  Time to Get Serious about Measurement in Synthetic Biology. , 2018, Trends in biotechnology.

[3]  Jacob Beal,et al.  Reducing DNA context dependence in bacterial promoters , 2017, PloS one.

[4]  Matthew R. Pocock,et al.  SBOL Visual: A Graphical Language for Genetic Designs , 2015, PLoS biology.

[5]  Jacob Beal,et al.  Signal-to-Noise Ratio Measures Efficacy of Biological Computing Devices and Circuits , 2015, Front. Bioeng. Biotechnol..

[6]  Timothy S. Ham,et al.  Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.

[7]  Jacob Beal,et al.  High-performance chemical- and light-inducible recombinases in mammalian cells and mice , 2019, Nature Communications.

[8]  Allan Kuchinsky,et al.  The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology , 2014, Nature Biotechnology.

[9]  Ian P. McCarthy,et al.  Standardization efforts: The relationship between knowledge dimensions, search processes and innovation outcomes , 2016 .

[10]  Zachary N. Russ,et al.  An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose. , 2015, Nature chemical biology.

[11]  Jacob Beal,et al.  High-performance chemical- and light-inducible recombinases in mammalian cells and mice , 2019, Nature Communications.

[12]  Manuel Porcar,et al.  Standards not that standard , 2015, Journal of biological engineering.

[13]  Zhen Zhang,et al.  Sharing Structure and Function in Biological Design with SBOL 2.0. , 2016, ACS synthetic biology.

[14]  Daniel J Nicholson,et al.  Is the cell really a machine? , 2019, Journal of theoretical biology.

[15]  Galdzicki Michal,et al.  SBOL: A community standard for communicating designs in synthetic biology , 2013 .

[16]  Jacob Beal,et al.  A standard-enabled workflow for synthetic biology. , 2017, Biochemical Society transactions.

[17]  Markus Schmidt,et al.  A metric space for semantic containment: Towards the implementation of genetic firewalls , 2019, Biosyst..

[18]  Gary D. Bader,et al.  Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019 , 2019, J. Integr. Bioinform..

[19]  Sujan M. Dan How interface formats gain market acceptance: The role of developers and format characteristics in the development of de facto standards , 2019 .

[20]  Thomas F. Knight,et al.  Idempotent Vector Design for Standard Assembly of Biobricks , 2003 .

[21]  Thomas E. Gorochowski,et al.  Pathways to cellular supremacy in biocomputing , 2019, Nature Communications.

[22]  James Alastair McLaughlin,et al.  SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts , 2019, Nucleic Acids Res..

[23]  Johanna Bobrow,et al.  Standardizing Automated DNA Assembly: Best Practices, Metrics, and Protocols Using Robots , 2019, SLAS technology.

[24]  Robert Sidney Cox,et al.  Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1 , 2019, J. Integr. Bioinform..

[25]  Jim Philp,et al.  Enabling the Advanced Bioeconomy through Public Policy Supporting Biofoundries and Engineering Biology. , 2019, Trends in biotechnology.

[26]  Anil Wipat,et al.  Future‐proofing synthetic biology: educating the next generation , 2019, Engineering Biology.

[27]  V. de Lorenzo,et al.  Biological standards for the Knowledge-Based BioEconomy: What is at stake. , 2018, New biotechnology.

[28]  Jacob Beal,et al.  Communicating Structure and Function in Synthetic Biology Diagrams. , 2019, ACS synthetic biology.

[29]  Jacob Beal,et al.  Bioengineering and Biotechnology Review Article Bridging the Gap: a Roadmap to Breaking the Biological Design Barrier , 2022 .

[30]  Manuel Porcar,et al.  iGEM 2.0—refoundations for engineering biology , 2014, Nature Biotechnology.

[31]  D. Endy Foundations for engineering biology , 2005, Nature.