Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
暂无分享,去创建一个
[1] J. Kjems,et al. Natural RNA circles function as efficient microRNA sponges , 2013, Nature.
[2] Sebastian D. Mackowiak,et al. Circular RNAs are a large class of animal RNAs with regulatory potency , 2013, Nature.
[3] G. Hannon,et al. The Structure of Human Argonaute-2 in Complex with miR-20a , 2012, Cell.
[4] K. Zen,et al. Mouse miRNA-709 directly regulates miRNA-15a/16-1 biogenesis at the posttranscriptional level in the nucleus: evidence for a microRNA hierarchy system , 2011, Cell Research.
[5] Ivo Grosse,et al. Functional microRNA targets in protein coding sequences , 2012, Bioinform..
[6] S. Chi,et al. An alternative mode of microRNA target recognition , 2012, Nature Structural &Molecular Biology.
[7] Nectarios Koziris,et al. TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support , 2011, Nucleic Acids Res..
[8] Hanah Margalit,et al. A wide repertoire of miRNA binding sites: prediction and functional implications , 2011, Bioinform..
[9] Sean P Ryder,et al. Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing. , 2011, RNA.
[10] P. Pandolfi,et al. A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language? , 2011, Cell.
[11] D. Bartel,et al. Weak Seed-Pairing Stability and High Target-Site Abundance Decrease the Proficiency of lsy-6 and Other miRNAs , 2011, Nature Structural &Molecular Biology.
[12] R. Darnell,et al. Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data , 2011, Nature Biotechnology.
[13] Peter T. Nelson,et al. Specific sequence determinants of miR-15/107 microRNA gene group targets , 2011, Nucleic acids research.
[14] David Tollervey,et al. Cross-linking, ligation, and sequencing of hybrids reveals RNA–RNA interactions in yeast , 2011, Proceedings of the National Academy of Sciences.
[15] William Stafford Noble,et al. FIMO: scanning for occurrences of a given motif , 2011, Bioinform..
[16] S. Crooke,et al. Depletion of key protein components of the RISC pathway impairs pre-ribosomal RNA processing , 2011, Nucleic acids research.
[17] Yoshihide Hayashizaki,et al. Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin , 2011, RNA biology.
[18] Chi-Ying F. Huang,et al. miRTarBase: a database curates experimentally validated microRNA–target interactions , 2010, Nucleic Acids Res..
[19] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[20] V. Kim,et al. Modifications of Small RNAs and Their Associated Proteins , 2010, Cell.
[21] Shuang Huang,et al. Ratio of miR-196s to HOXC8 messenger RNA correlates with breast cancer cell migration and metastasis. , 2010, Cancer research.
[22] Mohsen Khorshid,et al. PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins , 2010, Journal of visualized experiments : JoVE.
[23] P. Pandolfi,et al. A coding-independent function of gene and pseudogene mRNAs regulates tumour biology , 2010, Nature.
[24] W. Filipowicz,et al. Regulation of mRNA translation and stability by microRNAs. , 2010, Annual review of biochemistry.
[25] Guanming Wu,et al. A Viral microRNA Down-Regulates Multiple Cell Cycle Genes through mRNA 5′UTRs , 2010, PLoS pathogens.
[26] Kyle Kai-How Farh,et al. Expanding the microRNA targeting code: functional sites with centered pairing. , 2010, Molecular cell.
[27] Peter T Nelson,et al. Individual microRNAs (miRNAs) display distinct mRNA targeting “rules” , 2010, RNA biology.
[28] Scott B. Dewell,et al. Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP , 2010, Cell.
[29] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[30] K. Pollard,et al. Detection of nonneutral substitution rates on mammalian phylogenies. , 2010, Genome research.
[31] H. Grosshans,et al. Active turnover modulates mature microRNA activity in Caenorhabditis elegans , 2009, Nature.
[32] M. Kiebler,et al. Faculty Opinions recommendation of Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. , 2009 .
[33] Oliver Hofmann,et al. miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to "seedless" 3'UTR microRNA recognition elements. , 2009, Molecular cell.
[34] E. Chan,et al. The C-terminal half of human Ago2 binds to multiple GW-rich regions of GW182 and requires GW182 to mediate silencing. , 2009, RNA.
[35] Xiaozhong Wang,et al. Essential and overlapping functions for mammalian Argonautes in microRNA silencing. , 2009, Genes & development.
[36] D. Bartel. MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.
[37] Stijn van Dongen,et al. miRBase: tools for microRNA genomics , 2007, Nucleic Acids Res..
[38] Michael Zuker,et al. UNAFold: software for nucleic acid folding and hybridization. , 2008, Methods in molecular biology.
[39] Richard S. Rogers,et al. Comprehensive analysis of diverse ribonucleoprotein complexes , 2007, Nature Methods.
[40] Michael Kertesz,et al. The role of site accessibility in microRNA target recognition , 2007, Nature Genetics.
[41] L. Lim,et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. , 2007, Molecular cell.
[42] T. Pederson,et al. MicroRNA-206 colocalizes with ribosome-rich regions in both the nucleolus and cytoplasm of rat myogenic cells , 2006, Proceedings of the National Academy of Sciences.
[43] K. Gunsalus,et al. Combinatorial microRNA target predictions , 2005, Nature Genetics.
[44] C. Burge,et al. Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets , 2005, Cell.
[45] F. Slack,et al. Architecture of a validated microRNA::target interaction. , 2004, Chemistry & biology.
[46] Alok J. Saldanha,et al. Java Treeview - extensible visualization of microarray data , 2004, Bioinform..
[47] Anton J. Enright,et al. Human MicroRNA Targets , 2004, PLoS biology.
[48] R. Giegerich,et al. Fast and effective prediction of microRNA/target duplexes. , 2004, RNA.
[49] J. M. Thomson,et al. Argonaute2 Is the Catalytic Engine of Mammalian RNAi , 2004, Science.
[50] T. Tuschl,et al. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. , 2004, Molecular cell.
[51] D. Bartel,et al. MicroRNA-Directed Cleavage of HOXB8 mRNA , 2004, Science.
[52] Brad T. Sherman,et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.
[53] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[54] G. Ruvkun,et al. A bulged lin-4/lin-14 RNA duplex is sufficient for Caenorhabditis elegans lin-14 temporal gradient formation. , 1996, Genes & development.
[55] Charles Elkan,et al. Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.
[56] AC Tose. Cell , 1993, Cell.
[57] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[58] F. Barré-Sinoussi,et al. HIV‐1 reverse transcriptase specifically interacts with the anticodon domain of its cognate primer tRNA. , 1989, The EMBO journal.