Incorporating higher-order representative features improves prediction in network-based cancer prognosis analysis
暂无分享,去创建一个
Jian Huang | Shuangge Ma | Michael R Kosorok | M. Kosorok | Jian Huang | Shuangge Ma | Ying Dai | Ying Dai
[1] L. Staudt,et al. Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells. , 2004, The New England journal of medicine.
[2] Steen Knudsen. Cancer Diagnostics with DNA Microarrays , 2006 .
[3] Joaquín Dopazo,et al. Papers on normalization, variable selection, classification or clustering of microarray data , 2009, Bioinform..
[4] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[5] Andy M. Yip,et al. Gene network interconnectedness and the generalized topological overlap measure , 2007, BMC Bioinformatics.
[6] Kai Wang,et al. Pathway-based approaches for analysis of genomewide association studies. , 2007, American journal of human genetics.
[7] Jianqing Fan,et al. Sure independence screening for ultrahigh dimensional feature space , 2006, math/0612857.
[8] L. Staudt,et al. The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. , 2002, The New England journal of medicine.
[9] Jian Huang,et al. Regularized ROC method for disease classification and biomarker selection with microarray data , 2005, Bioinform..
[10] Phillip Stafford,et al. Methods in Microarray Normalization , 2008 .
[11] Peter Langfelder,et al. Eigengene networks for studying the relationships between co-expression modules , 2007, BMC Systems Biology.
[12] M. West,et al. Gene expression predictors of breast cancer outcomes , 2003, The Lancet.
[13] Peter J. Park,et al. A multivariate approach for integrating genome-wide expression data and biological knowledge , 2006, Bioinform..
[14] W Y Zhang,et al. Discussion on `Sure independence screening for ultra-high dimensional feature space' by Fan, J and Lv, J. , 2008 .
[15] Bin Zhang,et al. Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R , 2008, Bioinform..
[16] Peter Langfelder,et al. Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients , 2009, BMC Genomics.
[17] Richard A. Johnson,et al. Applied Multivariate Statistical Analysis , 1983 .
[18] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[19] Xi Chen,et al. Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes , 2008, Bioinform..
[20] S. Horvath,et al. Statistical Applications in Genetics and Molecular Biology , 2011 .
[21] Steen Knudsen. Cancer Diagnostics with DNA Microarrays: Knudsen/Cancer Diagnostics with DNA Microarrays , 2006 .
[22] Philip M. Long,et al. Breast cancer classification and prognosis based on gene expression profiles from a population-based study , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[23] L. Staudt,et al. The proliferation gene expression signature is a quantitative integrator of oncogenic events that predicts survival in mantle cell lymphoma. , 2003, Cancer cell.
[24] Darlene R. Goldstein,et al. Meta-analysis and Combining Information in Genetics and Genomics , 2009 .
[25] G. V. Ommen,et al. Medical genomics , 2001, European Journal of Human Genetics.
[26] R. Tibshirani,et al. Semi-Supervised Methods to Predict Patient Survival from Gene Expression Data , 2004, PLoS biology.
[27] Jian Huang,et al. Penalized feature selection and classification in bioinformatics , 2008, Briefings Bioinform..
[28] Hidde de Jong,et al. Modeling and Simulation of Genetic Regulatory Systems: A Literature Review , 2002, J. Comput. Biol..
[29] Yang Li,et al. Semiparametric prognosis models in genomic studies , 2010, Briefings Bioinform..
[30] Michael R. Kosorok,et al. Identification of differential gene pathways with principal component analysis , 2009, Bioinform..
[31] Yudong D. He,et al. Gene expression profiling predicts clinical outcome of breast cancer , 2002, Nature.
[32] David M. Rocke,et al. Dimension Reduction for Classification with Gene Expression Microarray Data , 2006, Statistical applications in genetics and molecular biology.