The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools.

[1]  S. Brunak,et al.  Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.

[2]  Amos Bairoch,et al.  Annotation of post‐translational modifications in the Swiss‐Prot knowledge base , 2004, Proteomics.

[3]  M. Zivy,et al.  The maize two-dimensional gel protein database: towards an integrated genome analysis program , 1996, Theoretical and Applied Genetics.

[4]  Torsten Schwede,et al.  The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models , 2004, Nucleic Acids Res..

[5]  Amos Bairoch,et al.  Recent improvements to the PROSITE database , 2004, Nucleic Acids Res..

[6]  Qunfeng Dong,et al.  MaizeGDB, the community database for maize genetics and genomics , 2004, Nucleic Acids Res..

[7]  Cathy H. Wu,et al.  UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..

[8]  Joseph M. Dale,et al.  Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome , 2003, Science.

[9]  Manuel C. Peitsch,et al.  SWISS-MODEL: an automated protein homology-modeling server , 2003, Nucleic Acids Res..

[10]  Ron D. Appel,et al.  ExPASy: the proteomics server for in-depth protein knowledge and analysis , 2003, Nucleic Acids Res..

[11]  Anne-Lise Veuthey,et al.  Automated annotation of microbial proteomes in SWISS-PROT , 2003, Comput. Biol. Chem..

[12]  Maria Jesus Martin,et al.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 , 2003, Nucleic Acids Res..

[13]  Alex Bateman,et al.  The InterPro Database, 2003 brings increased coverage and new features , 2003, Nucleic Acids Res..

[14]  Hiren J. Joshi,et al.  GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003, update , 2003, Nucleic Acids Res..

[15]  L. Stein,et al.  Gramene, a Tool for Grass Genomics , 2002, Plant Physiology.

[16]  Amos Bairoch,et al.  FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification , 2002, Proteomics.

[17]  Amos Bairoch,et al.  PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors , 2002, Briefings Bioinform..

[18]  Amos Bairoch,et al.  ScanProsite: a reference implementation of a PROSITE scanning tool. , 2002, Applied bioinformatics.

[19]  B. Haas,et al.  Full-length messenger RNA sequences greatly improve genome annotation , 2002, Genome Biology.

[20]  Rolf Apweiler,et al.  InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..

[21]  Rolf Apweiler,et al.  Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences , 2001, Briefings Bioinform..

[22]  Catherine A. Cooper,et al.  GlycoMod – A software tool for determining glycosylation compositions from mass spectrometric data , 2001, Proteomics.

[23]  Wen Huang,et al.  The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant , 2001, Nucleic Acids Res..

[24]  T. N. Bhat,et al.  The PDB data uniformity project , 2001, Nucleic Acids Res..

[25]  The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[26]  Rolf Apweiler,et al.  VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL , 2000, Bioinform..

[27]  S. Brunak,et al.  Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. , 2000, Journal of molecular biology.

[28]  Ron D. Appel,et al.  The 1999 SWISS-2DPAGE database update , 2000, Nucleic Acids Res..

[29]  Amos Bairoch,et al.  The ENZYME database in 2000 , 2000, Nucleic Acids Res..

[30]  P. Bork,et al.  Prediction of potential GPI-modification sites in proprotein sequences. , 1999, Journal of molecular biology.

[31]  A Bairoch,et al.  High-throughput mass spectrometric discovery of protein post-translational modifications. , 1999, Journal of molecular biology.

[32]  Chris Sander,et al.  Protein folds and families: sequence and structure alignments , 1999, Nucleic Acids Res..

[33]  A Bairoch,et al.  Multiple parameter cross‐species protein identification using MultiIdent ‐ a world‐wide web accessible tool , 1998, Electrophoresis.

[34]  Erik L. L. Sonnhammer,et al.  A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences , 1998, ISMB.

[35]  A Bairoch,et al.  Protein identification with N and C-terminal sequence tags in proteome projects. , 1998, Journal of molecular biology.

[36]  Amos Bairoch,et al.  Detailed peptide characterization using PEPTIDEMASS – a World‐Wide‐Web‐accessible tool , 1997, Electrophoresis.

[37]  Ron D. Appel,et al.  Protein identification with sequence tags , 1996, Current Biology.

[38]  M R Wilkins,et al.  Rapid protein identification using N-terminal "sequence tag" and amino acid analysis. , 1996, Biochemical and biophysical research communications.

[39]  D. Hochstrasser,et al.  From Proteins to Proteomes: Large Scale Protein Identification by Two-Dimensional Electrophoresis and Arnino Acid Analysis , 1996, Bio/Technology.

[40]  W R Taylor,et al.  A model recognition approach to the prediction of all-helical membrane protein structure and topology. , 1994, Biochemistry.

[41]  D. Hochstrasser,et al.  The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences , 1993, Electrophoresis.

[42]  A. Lupas,et al.  Predicting coiled coils from protein sequences , 1991, Science.

[43]  D. Eisenberg,et al.  Analysis of membrane and surface protein sequences with the hydrophobic moment plot. , 1984, Journal of molecular biology.