Temporal order of RNase IIIb and loss-of-function mutations during development determines phenotype in pleuropulmonary blastoma / DICER1 syndrome: a unique variant of the two-hit tumor suppression model

Pleuropulmonary blastoma (PPB) is the most frequent pediatric lung tumor and often the first indication of a pleiotropic cancer predisposition, DICER1 syndrome, comprising a range of other individually rare, benign and malignant tumors of childhood and early adulthood. The genetics of DICER1-associated tumorigenesis are unusual in that tumors typically bear neomorphic missense mutations at one of five specific “hotspot” codons within the RNase IIIb domain of DICER 1, combined with complete loss of function (LOF) in the other allele. We analyzed a cohort of 124 PPB children for predisposing DICER1 mutations and sought correlations with clinical phenotypes. Over 70% have inherited or de novo germline LOF mutations, most of which truncate the DICER1 open reading frame. We identified a minority of patients who have no germline mutation, but are instead mosaic for predisposing DICER1 mutations. Mosaicism for RNase IIIb domain hotspot mutations defines a special category of DICER1 syndrome patients, clinically distinguished from those with germline or mosaic LOF mutations by earlier onsets and numerous discrete foci of neoplastic disease involving multiple syndromic organ sites. A final category of PBB patients lack predisposing germline or mosaic mutations and have sporadic (rather than syndromic) disease limited to a single PPB tumor bearing tumor-specific RNase IIIb and LOF mutations. We propose that acquisition of a neomorphic RNase IIIb domain mutation is the rate limiting event in DICER1-associated tumorigenesis, and that distinct clinical phenotypes associated with mutational categories reflect the temporal order in which LOF and RNase IIIb domain mutations are acquired during development.

[1]  J. Ragoussis,et al.  High-sensitivity sequencing reveals multi-organ somatic mosaicism causing DICER1 syndrome , 2015, Journal of Medical Genetics.

[2]  Yongwook Choi,et al.  PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels , 2015, Bioinform..

[3]  K. Wikenheiser-Brokamp,et al.  Cell‐ and developmental stage‐specific Dicer1 ablation in the lung epithelium models cystic pleuropulmonary blastoma , 2015, The Journal of pathology.

[4]  Gretchen M. Williams,et al.  Pleuropulmonary blastoma: A report on 350 central pathology–confirmed pleuropulmonary blastoma cases by the International Pleuropulmonary Blastoma Registry , 2015, Cancer.

[5]  Nardin Samuel,et al.  Management of familial cancer: sequencing, surveillance and society , 2014, Nature Reviews Clinical Oncology.

[6]  L. Dehner,et al.  Case 211: pleuropulmonary blastoma in association with cystic nephroma-DICER1 syndrome. , 2014, Radiology.

[7]  Dinesh Rakheja,et al.  Somatic mutations in DROSHA and DICER1 impair microRNA biogenesis through distinct mechanisms in Wilms tumours , 2014, Nature Communications.

[8]  A. L. Frazier,et al.  Judicious DICER1 testing and surveillance imaging facilitates early diagnosis and cure of pleuropulmonary blastoma , 2014, Pediatric blood & cancer.

[9]  W. Foulkes,et al.  DICER1: mutations, microRNAs and mechanisms , 2014, Nature Reviews Cancer.

[10]  L. Vissers,et al.  Parental somatic mosaicism is underrecognized and influences recurrence risk of genomic disorders. , 2014, American journal of human genetics.

[11]  J. Lupski,et al.  Germ-line and somatic DICER1 mutations in pineoblastoma , 2014, Acta Neuropathologica.

[12]  Trevor J Pugh,et al.  Exome sequencing of pleuropulmonary blastoma reveals frequent biallelic loss of TP53 and two hits in DICER1 resulting in retention of 5p-derived miRNA hairpin loop sequences , 2014, Oncogene.

[13]  P. Grundy,et al.  Recurrent somatic mutation in DROSHA induces microRNA profile changes in Wilms tumour , 2014, Nature Communications.

[14]  P. Maeder,et al.  Pituitary blastoma: a pathognomonic feature of germ-line DICER1 mutations , 2014, Acta Neuropathologica.

[15]  S. Miyano,et al.  Biallelic DICER1 mutations in sporadic pleuropulmonary blastoma. , 2014, Cancer research.

[16]  S. Nelson,et al.  Expanding the phenotype of mutations in DICER1: mosaic missense mutations in the RNase IIIb domain of DICER1 cause GLOW syndrome , 2014, Journal of Medical Genetics.

[17]  Gretchen M. Williams,et al.  DICER1-Pleuropulmonary Blastoma Familial Tumor Predisposition Syndrome: A Unique Constellation of Neoplastic Conditions , 2014, Pathology case reviews.

[18]  C. Shields,et al.  Enhanced Sensitivity for Detection of Low‐Level Germline Mosaic RB1 Mutations in Sporadic Retinoblastoma Cases Using Deep Semiconductor Sequencing , 2014, Human mutation.

[19]  Gretchen M. Williams,et al.  DICER1 mutations in childhood cystic nephroma and its relationship to DICER1-renal sarcoma , 2014, Modern Pathology.

[20]  W. Foulkes,et al.  Germ-line deletion in DICER1 revealed by a novel MLPA assay using synthetic oligonucleotides , 2013, European Journal of Human Genetics.

[21]  W. Foulkes,et al.  Germ‐line and somatic DICER1 mutations in a pleuropulmonary blastoma , 2013, Pediatric blood & cancer.

[22]  P. Ng,et al.  SIFT Indel: Predictions for the Functional Effects of Amino Acid Insertions/Deletions in Proteins , 2013, PloS one.

[23]  W. Foulkes,et al.  DICER1 hotspot mutations in non-epithelial gonadal tumours , 2013, British Journal of Cancer.

[24]  W. Foulkes,et al.  Biallelic DICER1 mutations occur in Wilms tumours , 2013, The Journal of pathology.

[25]  C. Kratz,et al.  DICER1 Syndrome: A New Cancer Syndrome , 2013, Klinische Pädiatrie.

[26]  Philip Hugenholtz,et al.  Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data , 2013, PLoS Comput. Biol..

[27]  D. Huntsman,et al.  Cancer‐associated somatic DICER1 hotspot mutations cause defective miRNA processing and reverse‐strand expression bias to predominantly mature 3p strands through loss of 5p strand cleavage , 2013, The Journal of pathology.

[28]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration , 2012, Briefings Bioinform..

[29]  J. Miller,et al.  Predicting the Functional Effect of Amino Acid Substitutions and Indels , 2012, PloS one.

[30]  N. André,et al.  DICER1 Mutations in embryonal rhabdomyosarcomas from children with and without familial PPB‐tumor predisposition syndrome , 2012, Pediatric blood & cancer.

[31]  Jing Hu,et al.  SIFT web server: predicting effects of amino acid substitutions on proteins , 2012, Nucleic Acids Res..

[32]  Arjun Bhutkar,et al.  In vivo structure-function analysis of human Dicer reveals directional processing of precursor miRNAs. , 2012, RNA.

[33]  L. Dehner,et al.  Embryonal rhabdomyosarcoma of the uterine cervix: a report of 14 cases and a discussion of its unusual clinicopathological associations , 2012, Modern Pathology.

[34]  Steven J. M. Jones,et al.  Recurrent somatic DICER1 mutations in nonepithelial ovarian cancers. , 2012, The New England journal of medicine.

[35]  W. Foulkes,et al.  Extending the phenotypes associated with DICER1 mutations , 2011, Human mutation.

[36]  A. Mittal,et al.  Bilateral cystic nephroma with pleuropulmonary blastoma , 2011, BMJ Case Reports.

[37]  A. Nicholson,et al.  DICER1 syndrome: clarifying the diagnosis, clinical features and management implications of a pleiotropic tumour predisposition syndrome , 2011, Journal of Medical Genetics.

[38]  W. Foulkes,et al.  DICER1 mutations in familial multinodular goiter with and without ovarian Sertoli-Leydig cell tumors. , 2011, JAMA.

[39]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer , 2011, Nature Biotechnology.

[40]  Gretchen M. Williams,et al.  Ciliary body medulloepithelioma: four cases associated with pleuropulmonary blastoma—a report from the International Pleuropulmonary Blastoma Registry , 2010, British Journal of Ophthalmology.

[41]  M. Elliott,et al.  Bilateral progressive cystic nephroma in a 9-month-old male infant requiring renal replacement therapy , 2010, Pediatric Nephrology.

[42]  Gretchen M. Williams,et al.  DICER1 Mutations in Familial Pleuropulmonary Blastoma , 2009, Science.

[43]  F. Kayaselçuk,et al.  Familial cystic nephroma in two siblings with pleuropulmonary blastoma , 2009, Pathology & Oncology Research.

[44]  Gretchen M. Williams,et al.  Type I Pleuropulmonary Blastoma: Pathology and Biology Study of 51 Cases From the International Pleuropulmonary Blastoma Registry , 2008, The American journal of surgical pathology.

[45]  Gretchen M. Williams,et al.  Familial association of pleuropulmonary blastoma with cystic nephroma and other renal tumors: a report from the International Pleuropulmonary Blastoma Registry. , 2006, The Journal of pediatrics.

[46]  S. Yazbeck,et al.  An Association of Pleuropulmonary Blastoma and Cystic Nephroma: Possible Genetic Association , 2006, Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society.

[47]  G. Hannon,et al.  Processing of primary microRNAs by the Microprocessor complex , 2004, Nature.

[48]  Steven Henikoff,et al.  SIFT: predicting amino acid changes that affect protein function , 2003, Nucleic Acids Res..

[49]  A. Caudy,et al.  Role for a bidentate ribonuclease in the initiation step of RNA interference , 2001 .

[50]  L. Dehner,et al.  Nasal chondromesenchymal hamartoma: an upper respiratory tract analogue of the chest wall mesenchymal hamartoma. , 1998, The American journal of surgical pathology.

[51]  S. Bhatia,et al.  Pleuropulmonary blastoma , 1997, Cancer.

[52]  B. Delahunt,et al.  Familial cystic nephroma and pleuropulmonary blastoma , 1993, Cancer.

[53]  B. Delahunt,et al.  FAMILIAL CYSTIC NEPHROMA AND PLEUROPULMONARY BLASTOMA. AUTHOR'S REPLY , 1993 .