A novel behavioral model of the pasture-based dairy cow from GPS data using data mining and machine learning techniques.

A better understanding of the behavior of individual grazing dairy cattle will assist in improving productivity and welfare. Global positioning systems (GPS) applied to cows could provide a means of monitoring grazing herds while overcoming the substantial efforts required for manual observation. Any model of behavioral prediction using GPS needs to be accurate and robust by accounting for inter-cow variation as well as atmospheric effects. We evaluated the performance using a series of machine learning algorithms on GPS data collected from 40 pasture-based dairy cows over 4 mo. A feature extraction step was performed on the collected raw GPS data, which resulted in 43 different attributes. The evaluated behaviors were grazing, resting, and walking. Classifier learners were built using 10 times 10-fold cross validation and tested on an independent test set. Results were evaluated using a variety of statistical significance tests across all parameters. We found that final model selection depended upon level of performance and model complexity. The classifier learner deemed most suitable for this particular problem was JRip, a rule-based learner (classification accuracy=0.85; false positive rate=0.10; F-measure=0.76; area under the receiver operating curve=0.87). This model will be used in further studies to assess the behavior and welfare of pasture-based dairy cows.

[1]  William W. Cohen Fast Effective Rule Induction , 1995, ICML.

[2]  Ian H. Witten,et al.  The WEKA data mining software: an update , 2009, SKDD.

[3]  M. Coffey,et al.  Changes in feeding behavior as possible indicators for the automatic monitoring of health disorders in dairy cows. , 2008, Journal of dairy science.

[4]  D M Weary,et al.  Clinical ketosis and standing behavior in transition cows. , 2015, Journal of dairy science.

[5]  C. G. van Reenen,et al.  Automatic monitoring of lying, standing and walking behavior in dairy cattle , 2007 .

[6]  Remco R. Bouckaert Practical Bias Variance Decomposition , 2008, Australasian Conference on Artificial Intelligence.

[7]  R. Bicalho,et al.  Association between a visual and an automated locomotion score in lactating Holstein cows. , 2007, Journal of dairy science.

[8]  Ron Kohavi,et al.  A Study of Cross-Validation and Bootstrap for Accuracy Estimation and Model Selection , 1995, IJCAI.

[9]  Jeffrey Rushen,et al.  Can automated measures of lying time help assess lameness and leg lesions on tie-stall dairy farms? , 2016 .

[10]  Bas Kemp,et al.  Pedometer readings for estrous detection and as predictor for time of ovulation in dairy cattle. , 2005, Theriogenology.

[11]  Pascal Sirguey,et al.  Performance and Accuracy of Lightweight and Low-Cost GPS Data Loggers According to Antenna Positions, Fix Intervals, Habitats and Animal Movements , 2015, PloS one.

[12]  Per Peetz Nielsen,et al.  Automatic registration of grazing behaviour in dairy cows using 3D activity loggers , 2013 .

[13]  David G. Renter,et al.  Evaluation of three-dimensional accelerometers to monitor and classify behavior patterns in cattle , 2009 .

[14]  David J. Hand,et al.  Measuring classifier performance: a coherent alternative to the area under the ROC curve , 2009, Machine Learning.

[15]  Rupert M. Bruckmaier,et al.  Comparison of energy expenditure, eating pattern and physical activity of grazing and zero-grazing dairy cows at different time points during lactation , 2014 .

[16]  David Page,et al.  Prediction of insemination outcomes in Holstein dairy cattle using alternative machine learning algorithms. , 2014, Journal of dairy science.

[17]  Jeffrey Rushen,et al.  Automated and visual measurements of estrous behavior and their sources of variation in Holstein heifers. II: Standing and lying patterns. , 2015, Theriogenology.

[18]  Lars Relund Nielsen,et al.  Quantifying walking and standing behaviour of dairy cows using a moving average based on output from an accelerometer. , 2010 .

[19]  Robert J. Kilgour,et al.  In pursuit of "normal": A review of the behaviour of cattle at pasture , 2012 .

[20]  L. Green,et al.  Assessment of the welfare of dairy caftle using animal-based measurements: direct observations and investigation of farm records , 2003, Veterinary Record.

[21]  Tim Wark,et al.  Using high fix rate GPS data to determine the relationships between fix rate, prediction errors and patch selection , 2008 .

[22]  D. Pfeiffer,et al.  Use of data mining techniques to investigate disease risk classification as a proxy for compromised biosecurity of cattle herds in Wales , 2008, BMC veterinary research.

[23]  Daniel Berckmans,et al.  Lying patterns of high producing healthy dairy cows after calving in commercial herds as affected by age, environmental conditions and production , 2012 .

[24]  Bart Sonck,et al.  Variables of gait inconsistency outperform basic gait variables in detecting mildly lame cows , 2015 .

[25]  Michal Hejcman,et al.  Behavioural patterns of heifers under intensive and extensive continuous grazing on species-rich pasture in the Czech Republic , 2009 .

[26]  D Berckmans,et al.  Automatic measurement of touch and release angles of the fetlock joint for lameness detection in dairy cattle using vision techniques. , 2012, Journal of Dairy Science.

[27]  D M Weary,et al.  Prepartum behavior and dry matter intake identify dairy cows at risk for metritis. , 2007, Journal of dairy science.

[28]  D M Weary,et al.  Lying behavior and postpartum health status in grazing dairy cows. , 2014, Journal of dairy science.

[29]  Jan Hultgren,et al.  Prevalence and interrelationships of hoof lesions and lameness in Swedish dairy cows. , 2002, Preventive veterinary medicine.

[30]  Nathalie Japkowicz,et al.  The class imbalance problem: A systematic study , 2002, Intell. Data Anal..

[31]  Mikkel Baun Kjærgaard,et al.  High Classification Rates for Continuous Cow Activity Recognition Using Low-Cost GPS Positioning Sensors and Standard Machine Learning Techniques , 2011, ICDM.

[32]  J. Kaler,et al.  Effect of mobility score on milk yield and activity in dairy cattle. , 2011, Journal of dairy science.

[33]  Pat Langley,et al.  Estimating Continuous Distributions in Bayesian Classifiers , 1995, UAI.

[34]  Tom Fawcett,et al.  An introduction to ROC analysis , 2006, Pattern Recognit. Lett..

[35]  John Hancock,et al.  Studies of grazing behaviour in relation to grassland management I. Variations in grazing habits of dairy cattle , 1954, The Journal of Agricultural Science.

[36]  Greg Bishop-Hurley,et al.  Dynamic cattle behavioural classification using supervised ensemble classifiers , 2015, Comput. Electron. Agric..

[37]  J Rushen,et al.  Automated and visual measurements of estrous behavior and their sources of variation in Holstein heifers. I: Walking activity and behavior frequency. , 2015, Theriogenology.

[38]  Lee A. Vierling,et al.  Effects of habitat on GPS collar performance: using data screening to reduce location error , 2007 .

[39]  J. Ross Quinlan,et al.  C4.5: Programs for Machine Learning , 1992 .

[40]  Arie Ben-David,et al.  About the relationship between ROC curves and Cohen's kappa , 2008, Eng. Appl. Artif. Intell..

[41]  Yang Gao,et al.  An analysis on combined GPS/COMPASS data quality and its effect on single point positioning accuracy under different observing conditions , 2014 .

[42]  Georges Janeau,et al.  ASSESSING REAL DAILY DISTANCE TRAVELED BY UNGULATES USING DIFFERENTIAL GPS LOCATIONS , 2004 .

[43]  Manuel K. Schneider,et al.  Inferring Behavioral States of Grazing Livestock from High-Frequency Position Data Alone , 2014, PloS one.

[44]  N. Neerchal,et al.  Objective determination of claw pain and its relationship to limb locomotion score in dairy cattle. , 2007, Journal of dairy science.

[45]  Daniel Berckmans,et al.  Comparison of a three-dimensional and two-dimensional camera system for automated measurement of back posture in dairy cows , 2014 .

[46]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[47]  Herbert H. T. Prins,et al.  Deriving Animal Behaviour from High-Frequency GPS: Tracking Cows in Open and Forested Habitat , 2015, PloS one.