Multi-tissue partial volume quantification in multi-contrast MRI using an optimised spectral unmixing approach.

Multi-tissue partial volume estimation in MRI images is investigated with a viewpoint related to spectral unmixing as used in hyperspectral imaging. The main contribution of this paper is twofold. It firstly proposes a theoretical analysis of the statistical optimality conditions of the proportion estimation problem, which in the context of multi-contrast MRI data acquisition allows to appropriately set the imaging sequence parameters. Secondly, an efficient proportion quantification algorithm based on the minimisation of a penalised least-square criterion incorporating a regularity constraint on the spatial distribution of the proportions is proposed. Furthermore, the resulting developments are discussed using empirical simulations. The practical usefulness of the spectral unmixing approach for partial volume quantification in MRI is illustrated through an application to food analysis on the proving of a Danish pastry.

[1]  Christophe Collet,et al.  Unifying framework for multimodal brain MRI segmentation based on Hidden Markov Chains , 2008, Medical Image Anal..

[2]  Eric Walter,et al.  Identification of Parametric Models: from Experimental Data , 1997 .

[3]  Guylaine Collewet,et al.  Quantitative MRI in Food Science & Food Engineering , 2012 .

[4]  Hossein Parsaei,et al.  3D cerebral MR image segmentation using multiple-classifier system , 2017, Medical & Biological Engineering & Computing.

[5]  D. Holdsworth,et al.  Comparison of hyperpolarized 3He MRI rat lung volume measurement with micro‐computed tomography , 2010, NMR in biomedicine.

[6]  Émilie Chouzenoux,et al.  Fast Constrained Least Squares Spectral Unmixing Using Primal-Dual Interior-Point Optimization , 2014, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[7]  Chein-I Chang,et al.  Fully constrained least squares linear spectral mixture analysis method for material quantification in hyperspectral imagery , 2001, IEEE Trans. Geosci. Remote. Sens..

[8]  Robert D. Nowak,et al.  Wavelet-based Rician noise removal for magnetic resonance imaging , 1999, IEEE Trans. Image Process..

[9]  T. Lucas,et al.  Effect of the number of fat layers on expansion of Danish pastry during proving and baking , 2015 .

[10]  Mohamed-Jalal Fadili,et al.  Brain tissue classification of magnetic resonance images using partial volume modeling , 2000, IEEE Transactions on Medical Imaging.

[11]  Jan Larsen,et al.  Unmixing of Hyperspectral Images using Bayesian Non-negative Matrix Factorization with Volume Prior , 2011, J. Signal Process. Syst..

[12]  Koenraad Van Leemput,et al.  A unifying framework for partial volume segmentation of brain MR images , 2003, IEEE Transactions on Medical Imaging.

[13]  Jean-Yves Tourneret,et al.  Bayesian separation of spectral sources under non-negativity and full additivity constraints , 2009, Signal Process..

[14]  Chein-I. Chang Hyperspectral Data Exploitation: Theory and Applications , 2007 .

[15]  S. Kay Fundamentals of statistical signal processing: estimation theory , 1993 .

[16]  Émilie Chouzenoux,et al.  Primal-dual interior-point optimization based on majorization-minimization for edge-preserving spectral unmixing , 2014, 2014 IEEE International Conference on Image Processing (ICIP).

[17]  D R Haynor,et al.  Partial volume tissue classification of multichannel magnetic resonance images-a mixel model. , 1991, IEEE transactions on medical imaging.

[18]  Andrew Zisserman,et al.  Estimation of the partial volume effect in MRI , 2002, Medical Image Anal..

[19]  José V. Manjón,et al.  Improved estimates of partial volume coefficients from noisy brain MRI using spatial context , 2010, NeuroImage.

[20]  Antonio J. Plaza,et al.  Survey of geometric and statistical unmixing algorithms for hyperspectral images , 2010, 2010 2nd Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing.

[21]  Émilie Chouzenoux,et al.  Primal dual interior point optimization for penalized least squares estimation of abundance maps in hyperspectral imaging , 2012, 2012 4th Workshop on Hyperspectral Image and Signal Processing (WHISPERS).

[22]  G. Santyr,et al.  Comparison of hyperpolarized 3He and 129Xe MRI for the measurement of absolute ventilated lung volume in rats , 2014, Magnetic resonance in medicine.

[23]  Paul Armand,et al.  A Feasible BFGS Interior Point Algorithm for Solving Convex Minimization Problems , 2000, SIAM J. Optim..

[24]  Antonio J. Plaza,et al.  Hyperspectral Unmixing Overview: Geometrical, Statistical, and Sparse Regression-Based Approaches , 2012, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[25]  Joseph W. Boardman,et al.  Analysis, understanding, and visualization of hyperspectral data as convex sets in n space , 1995, Defense, Security, and Sensing.

[26]  John R. Schott,et al.  Remote Sensing: The Image Chain Approach , 1996 .

[27]  G Collewet,et al.  Assessment by MRI of local porosity in dough during proving. theoretical considerations and experimental validation using a spin-echo sequence. , 2003, Magnetic resonance imaging.

[28]  Maurice D. Craig,et al.  Minimum-volume transforms for remotely sensed data , 1994, IEEE Trans. Geosci. Remote. Sens..

[29]  Ali Mohammad-Djafari,et al.  Bayesian analysis of spectral mixture data using Markov Chain Monte Carlo Methods , 2006 .

[30]  R. Leahy,et al.  Magnetic Resonance Image Tissue Classification Using a Partial Volume Model , 2001, NeuroImage.

[31]  Alexis Roche,et al.  Partial Volume Estimation in Brain MRI Revisited , 2014, MICCAI.

[32]  Jérôme Idier,et al.  Convex half-quadratic criteria and interacting auxiliary variables for image restoration , 2001, IEEE Trans. Image Process..