Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits

[1]  M. Matz,et al.  2b-RAD: a simple and flexible method for genome-wide genotyping , 2012, Nature Methods.

[2]  Qian Qian,et al.  Control of grain size, shape and quality by OsSPL16 in rice , 2012, Nature Genetics.

[3]  Tanya Z. Berardini,et al.  The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools , 2011, Nucleic Acids Res..

[4]  M. Blaxter,et al.  Genome-wide genetic marker discovery and genotyping using next-generation sequencing , 2011, Nature Reviews Genetics.

[5]  Joseph D. Bowden,et al.  Separating foliar physiology from morphology reveals the relative roles of vertically structured transpiration factors within red maple crowns and limitations of larger scale models , 2011, Journal of experimental botany.

[6]  Peng Wang,et al.  A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. , 2011, Molecular plant.

[7]  S. Smeekens,et al.  Fructose sensitivity is suppressed in Arabidopsis by the transcription factor ANAC089 lacking the membrane-bound domain , 2011, Proceedings of the National Academy of Sciences.

[8]  E. Stahl,et al.  Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana. , 2010, Plant, cell & environment.

[9]  Jinjie Li,et al.  Fine mapping a QTL qCTB7 for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line , 2010, Theoretical and Applied Genetics.

[10]  M. Koornneef,et al.  The development of Arabidopsis as a model plant. , 2010, The Plant journal : for cell and molecular biology.

[11]  C. Giauffret,et al.  Fine Mapping and Haplotype Structure Analysis of a Major Flowering Time Quantitative Trait Locus on Maize Chromosome 10 , 2009, Genetics.

[12]  R. Amasino,et al.  Development of public immortal mapping populations, molecular markers and linkage maps for rapid cycling Brassica rapa and B. oleracea , 2009, Theoretical and Applied Genetics.

[13]  Joachim Selbig,et al.  Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. , 2009, The Plant journal : for cell and molecular biology.

[14]  K. Broman,et al.  A Guide to QTL Mapping with R/qtl , 2009 .

[15]  Michael Brudno,et al.  SHRiMP: Accurate Mapping of Short Color-space Reads , 2009, PLoS Comput. Biol..

[16]  H. Piepho,et al.  Unraveling Epistasis With Triple Testcross Progenies of Near-Isogenic Lines , 2009, Genetics.

[17]  Chris Mungall,et al.  AmiGO: online access to ontology and annotation data , 2008, Bioinform..

[18]  Brian S. Yandell,et al.  A Model Selection Approach for the Identification of Quantitative Trait Loci in Experimental Crosses, Allowing Epistasis , 2002, Genetics.

[19]  Karl W. Broman,et al.  Comprar A Guide to QTL Mapping with R/qtl | Broman, Karl W. | 9780387921242 | Springer , 2009 .

[20]  S. Assmann,et al.  Hormone interactions in stomatal function , 2009, Plant Molecular Biology.

[21]  M. Rockman,et al.  Reverse engineering the genotype–phenotype map with natural genetic variation , 2008, Nature.

[22]  Thomas Mitchell-Olds,et al.  Genetics of Drought Adaptation in Arabidopsis thaliana II. Qtl Analysis of a New Mapping Population, Kas-1 × Tsu-1 , 2008, Evolution; international journal of organic evolution.

[23]  J. Botto,et al.  Light-related loci controlling seed germination in Ler x Cvi and Bay-0 x Sha recombinant inbred-line populations of Arabidopsis thaliana. , 2008, Annals of botany.

[24]  M. Grusak,et al.  Quantitative trait locus mapping for seed mineral concentrations in two Arabidopsis thaliana recombinant inbred populations. , 2008, The New phytologist.

[25]  E. Stahl,et al.  Genetic variation in Arabidopsis thaliana for night-time leaf conductance. , 2008, Plant, cell & environment.

[26]  R. Meyer,et al.  Construction and analysis of 2 reciprocal Arabidopsis introgression line populations. , 2008, The Journal of heredity.

[27]  Qifa Zhang,et al.  Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice , 2008, Theoretical and Applied Genetics.

[28]  E. Buckler,et al.  Using Crossover Breakpoints in Recombinant Inbred Lines to Identify Quantitative Trait Loci Controlling the Global Recombination Frequency , 2007, Genetics.

[29]  M. Campbell,et al.  Predicting the Size of the Progeny Mapping Population Required to Positionally Clone a Gene , 2007, Genetics.

[30]  T. Mitchell-Olds,et al.  Comparative Genetic Mapping in Boechera stricta, a Close Relative of Arabidopsis1[C][W][OA] , 2007, Plant Physiology.

[31]  J. Keurentjes,et al.  Development of a Near-Isogenic Line Population of Arabidopsis thaliana and Comparison of Mapping Power With a Recombinant Inbred Line Population , 2007, Genetics.

[32]  J. Richards,et al.  Nighttime Stomatal Conductance and Transpiration in C3 and C4 Plants1[W] , 2006, Plant Physiology.

[33]  Rajeev K. Varshney,et al.  Model Plants and Crop Improvement , 2006 .

[34]  A. Price,et al.  Believe it or not, QTLs are accurate! , 2006, Trends in plant science.

[35]  T. Juenger,et al.  Natural genetic variation in whole‐genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression , 2006, Molecular ecology.

[36]  K. McBreen,et al.  Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Melissa D. Lehti-Shiu,et al.  Identification of Quantitative Trait Loci That Regulate Arabidopsis Root System Size and Plasticity , 2006, Genetics.

[38]  S. Assmann,et al.  The Control of Transpiration. Insights from Arabidopsis , 2006 .

[39]  R. Varshney,et al.  Development and Application of Genomic Models for Large-Crop Plant Genomes , 2006 .

[40]  Carlos D Bustamante,et al.  Ascertainment bias in studies of human genome-wide polymorphism. , 2005, Genome research.

[41]  Kirk A. Stowe,et al.  Identification and characterization of QTL underlying whole‐plant physiology in Arabidopsis thaliana: δ13C, stomatal conductance and transpiration efficiency , 2005 .

[42]  G. Stacey,et al.  “Translational” Legume Biology. Models to Crops , 2005, Plant Physiology.

[43]  Thomas L York,et al.  Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana. , 2005, Genome research.

[44]  S. Salvi,et al.  Validation and characterization of a major QTL affecting leaf ABA concentration in maize , 2005, Molecular Breeding.

[45]  A. Trubuil,et al.  Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family , 2005, Theoretical and Applied Genetics.

[46]  K. Boivin,et al.  The Arabidopsis Genome Sequence as a Tool for Genome Analysis in Brassicaceae. A Comparison of the Arabidopsis and Capsella rubella Genomes1[w] , 2004, Plant Physiology.

[47]  Yuval Eshed,et al.  A genomic library of Lycopersicon pennellii in L. esculentum: A tool for fine mapping of genes , 2004, Euphytica.

[48]  S. Tanksley,et al.  Restriction fragment length polymorphism maps and the concept of graphical genotypes , 2004, Theoretical and Applied Genetics.

[49]  T. Brody,et al.  On the power of experimental designs for the detection of linkage between marker loci and quantitative loci in crosses between inbred lines , 2004, Theoretical and Applied Genetics.

[50]  V. V. Symonds,et al.  An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application. , 2003, Genetics.

[51]  T. Mitchell-Olds,et al.  Establishment of a high-efficiency SNP-based framework marker set for Arabidopsis. , 2003, The Plant journal : for cell and molecular biology.

[52]  T. Mitchell-Olds,et al.  Genetics of drought adaptation in Arabidopsis thaliana: I. Pleiotropy contributes to genetic correlations among ecological traits , 2003, Molecular ecology.

[53]  Hao Wu,et al.  R/qtl: QTL Mapping in Experimental Crosses , 2003, Bioinform..

[54]  Zhengwei Liang,et al.  Fine Mapping and Characterization of Quantitative Trait Loci Hd4 and Hd5 Controlling Heading Date in Rice. , 2003 .

[55]  J. Beynon,et al.  STAIRS: a new genetic resource for functional genomic studies of Arabidopsis. , 2002, The Plant journal : for cell and molecular biology.

[56]  J. Schroeder,et al.  GUARD CELL SIGNAL TRANSDUCTION. , 2003, Annual review of plant physiology and plant molecular biology.

[57]  G. Churchill,et al.  A statistical framework for quantitative trait mapping. , 2001, Genetics.

[58]  M. Yano,et al.  Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2 , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[59]  S. Tanksley,et al.  Development of a set of near isogenic and backcross recombinant inbred lines containing most of the Lycopersicon hirsutum genome in a L. esculentum genetic background: a tool for gene mapping and gene discovery. , 2000, Genome.

[60]  T. C. Nesbitt,et al.  fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. , 2000, Science.

[61]  S. Tanksley,et al.  Fine mapping of a quantitative trait locus (QTL) from Lycopersicon hirsutum chromosome 1 affecting fruit characteristics and agronomic traits: breaking linkage among QTLs affecting different traits and dissection of heterosis for yield , 2000, Theoretical and Applied Genetics.

[62]  M Koornneef,et al.  Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. , 1998, The Plant journal : for cell and molecular biology.

[63]  C. Dean,et al.  Collinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome. , 1998, Genome.

[64]  P. Goldsbrough,et al.  Heterogeneous inbred family (HIF) analysis: a method for developing near-isogenic lines that differ at quantitative trait loci , 1997, Theoretical and Applied Genetics.

[65]  D. Zamir,et al.  An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. , 1995, Genetics.

[66]  Z. Zeng.  Precision mapping of quantitative trait loci. , 1994, Genetics.

[67]  J. Ecker,et al.  Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. , 1994, Genomics.

[68]  Z B Zeng,et al.  Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[69]  R. Jansen,et al.  Interval mapping of multiple quantitative trait loci. , 1993, Genetics.

[70]  C. Haley,et al.  A simple regression method for mapping quantitative trait loci in line crosses using flanking markers , 1992, Heredity.

[71]  S. Tanksley,et al.  Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes, in an interspecies cross of tomato. , 1990, Genetics.

[72]  E. Lander,et al.  Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. , 1989, Genetics.

[73]  K. Sax,et al.  The Association of Size Differences with Seed-Coat Pattern and Pigmentation in PHASEOLUS VULGARIS. , 1923, Genetics.