A DNA methylation map of human cancer at single base-pair resolution
暂无分享,去创建一个
Michael P. Schroeder | M. Esteller | N. López-Bigas | M. Gut | R. Royo | I. Gut | M. P. Schroeder | A. Guillaumet-Adkins | H. Heyn | S. Moran | S. Sayols | E. Vidal | M. Orozco | M Esteller | E Vidal | S Sayols | S Moran | A Guillaumet-Adkins | M P Schroeder | R Royo | M Orozco | M Gut | I Gut | N Lopez-Bigas | H Heyn | Modesto Orozco | Sergi Sayols | Amy Guillaumet-Adkins
[1] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[2] Michael J. Ziller,et al. Locally disordered methylation forms the basis of intratumor methylome variation in chronic lymphocytic leukemia. , 2014, Cancer cell.
[3] David T. W. Jones,et al. Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing , 2014, Nature.
[4] Roland Eils,et al. DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control , 2015, Nature Genetics.
[5] Vijay K. Tiwari,et al. DNA-binding factors shape the mouse methylome at distal regulatory regions , 2011, Nature.
[6] M. Esteller,et al. Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome , 2011, Epigenetics.
[7] Junjun Zhang,et al. BioMart Central Portal—unified access to biological data , 2009, Nucleic Acids Res..
[8] Andrew P. Feinberg,et al. Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host , 2013, Nature Reviews Cancer.
[9] Manolis Kellis,et al. ChromHMM: automating chromatin-state discovery and characterization , 2012, Nature Methods.
[10] Chris Sander,et al. Emerging landscape of oncogenic signatures across human cancers , 2013, Nature Genetics.
[11] S. Gabriel,et al. Pan-cancer patterns of somatic copy-number alteration , 2013, Nature Genetics.
[12] Alfonso Valencia,et al. Distinct DNA methylomes of newborns and centenarians , 2012, Proceedings of the National Academy of Sciences.
[13] P. Laird,et al. Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains , 2011, Nature Genetics.
[14] Felix Krueger,et al. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications , 2011, Bioinform..
[15] B. Langmead,et al. BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions , 2012, Genome Biology.
[16] Bronwen L. Aken,et al. GENCODE: The reference human genome annotation for The ENCODE Project , 2012, Genome research.
[17] W. Richard McCombie,et al. Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates , 2011, Cell.
[18] Michael B. Stadler,et al. Identification of active regulatory regions from DNA methylation data , 2013, Nucleic acids research.
[19] E. Ingley. Functions of the Lyn tyrosine kinase in health and disease , 2012, Cell Communication and Signaling.
[20] Martin Renqiang Min,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[21] Julie V. Harness,et al. Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment , 2014, Genome research.
[22] Ji Luo,et al. The phosphoinositide 3-kinase regulatory subunit p85alpha can exert tumor suppressor properties through negative regulation of growth factor signaling. , 2010, Cancer research.
[23] S. Rafii,et al. Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment. , 2011, Molecular cell.
[24] M. Esteller,et al. EZH2: an epigenetic gatekeeper promoting lymphomagenesis. , 2013, Cancer cell.
[25] A. Feinberg. Phenotypic plasticity and the epigenetics of human disease , 2007, Nature.
[26] A. Feinberg,et al. Regulated Noise in the Epigenetic Landscape of Development and Disease , 2012, Cell.
[27] Peter A. Jones,et al. The Epigenomics of Cancer , 2007, Cell.
[28] Wendy P Robinson,et al. The human placenta methylome , 2013, Proceedings of the National Academy of Sciences.
[29] Heng Li,et al. Tabix: fast retrieval of sequence features from generic TAB-delimited files , 2011, Bioinform..
[30] Alfonso Valencia,et al. Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia , 2012, Nature Genetics.
[31] Data production leads,et al. An integrated encyclopedia of DNA elements in the human genome , 2012 .
[32] M. Esteller,et al. Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient , 2012, Epigenetics.
[33] Paul Flicek,et al. Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers , 2015, Genome research.
[34] T. Spector,et al. Epigenetic differences arise during the lifetime of monozygotic twins. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[35] Peter A. Jones,et al. Epigenetics in cancer. , 2010, Carcinogenesis.
[36] Nuria Lopez-Bigas,et al. Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps , 2011, PloS one.
[37] M. Esteller,et al. Aberrant epigenetic landscape in cancer: how cellular identity goes awry. , 2010, Developmental cell.
[38] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[39] T. Gingeras,et al. active intergenic regulatory elements De novo DNA demethylation and non-coding transcription define , 2013 .
[40] David T. W. Jones,et al. Reduced H3K27me3 and DNA hypomethylation are major drivers of gene expression in K27M mutant pediatric high-grade gliomas. , 2013, Cancer cell.
[41] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[42] M. Esteller,et al. Infinium DNA Methylation Microarrays on Formalin-Fixed, Paraffin-Embedded Samples. , 2018, Methods in molecular biology.
[43] Gary D Bader,et al. Comprehensive identification of mutational cancer driver genes across 12 tumor types , 2013, Scientific Reports.
[44] Rafael A. Irizarry,et al. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays , 2014, Bioinform..
[45] Eric S. Lander,et al. The genomic complexity of primary human prostate cancer , 2010, Nature.
[46] Haoyang Cai,et al. CDCOCA: A statistical method to define complexity dependence of co-occuring chromosomal aberrations , 2011, BMC Medical Genomics.
[47] A. Gnirke,et al. Charting a dynamic DNA methylation landscape of the human genome , 2013, Nature.
[48] Peter A. Jones. Functions of DNA methylation: islands, start sites, gene bodies and beyond , 2012, Nature Reviews Genetics.
[49] Charles Y. Lin,et al. Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer , 2016, Genome Biology.
[50] Benjamin J. Raphael,et al. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. , 2013, The New England journal of medicine.
[51] E. Raineri,et al. Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers. , 2015, Genome research.
[52] Brian J. Stevenson,et al. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. , 2012, Genome research.
[53] A. Feinberg,et al. Increased methylation variation in epigenetic domains across cancer types , 2011, Nature Genetics.