Thermal transitions in mixtures of polydeoxyribodinucleotides

Oligo d(C‐A) and oligo d(T‐G) of known average lengths, prepared by a combination of chemical and enzymatic procedures, have been mixed in 0.02 M and 0.07 M Na+, and absorbance has been studied as a function of increasing temperature. The transitions have been analyzed for the temperature of maximum slope Tm, the breadth of the transition, the value of the slope at Tm, and the maximum hyperchromicity. Linear expressions have been found relating the inverse of the length in nucleotide units (n−1) of the shorter oligomer, irrespective of its identity, to Tm and also to the transition breadth. From a difference in slope between the Tm versus n−1 expressions for the two molarities, the entropy and enthalpy of melting have been calculated as a function of n−1.

[1]  Physicochemical basis of the recognition process in nucleic acid interactions. I. Interactions of polyuridylic acid and nucleosides. , 1966, Journal of molecular biology.

[2]  R. Wells,et al.  Studies on polynucleotides. LXXI. Sedimentation and buoyant density studies of some DNA-like polymers with repeating nucleotide sequences. , 1967, Journal of molecular biology.

[3]  G. Felsenfeld,et al.  The physical and chemical properties of nucleic acids. , 1967, Annual review of biochemistry.

[4]  F. Hayes,et al.  Gel filtration chromatography of polydeoxynucleotides using agarose columns. , 1969, Journal of chromatography.

[5]  A. Michelson,et al.  Polynucleotides. X. Oligonucleotides and their association with polynucleotides. , 1967, Biochimica et biophysica acta.

[6]  R. Owen,et al.  Determination of DNA base compositions from melting profiles in dilute buffers , 1969, Biopolymers.

[7]  L. Silvestri,et al.  Agreement Between Deoxyribonucleic Acid Base Composition and Taxometric Classification of Gram-Positive Cocci , 1965, Journal of bacteriology.

[8]  T. Jovin,et al.  Fractionation of oligodeoxynucleotides by polyacrylamide gel electrophoresis. , 1969, Analytical biochemistry.

[9]  B. Zimm,et al.  Theory of helix–coil transitions involving complementary poly‐ and oligo‐nucleotides. I. The complete binding case , 1963 .

[10]  P. Doty,et al.  Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. , 1962, Journal of molecular biology.

[11]  R. Ratliff,et al.  Heteropolydeoxynucleotides synthesized with terminal deoxyribonucleotidyltransferase. II. Nearest neighbor frequencies and extent of digestion by micrococcal deoxyribonuclease. , 1968, Biochemistry.

[12]  S. Lifson,et al.  Dependence of the melting temperature of DNA on salt concentration , 1965, Biopolymers.

[13]  H. Khorana,et al.  Studies on polynucleotides. L. Synthetic deoxyribopolynucleotides as templates for the DNA polymerase of Escherichia coli: a new double-stranded DNA-like polymer containing repeating dinucleotide sequences. , 1965, Journal of molecular biology.

[14]  H. Khorana,et al.  Studies on Polynucleotides. LXII.1 Deoxyribopolynucleotides Containing Repeating Trinucleotide Sequences (4).2 Preparation of Suitably Protected Deoxyribotrinucleotides3 , 1967 .

[15]  I. Tinoco,et al.  The stability of helical polynucleotides: base contributions. , 1962, Journal of molecular biology.

[16]  M. Record Electrostatic effects on polynucleotide transitions. I. Behavior at neutral pH , 1967, Biopolymers.

[17]  J. Applequist,et al.  Thermodynamics of the Helix-Coil Equilibrium in Oligoadenylic Acid from Hypochromicity Studies , 1965 .

[18]  H. Khorana,et al.  Studies on Polynucleotides. LXV.1 The Synthesis of Deoxyribopolynucleotides Containing Repeating Tetranucleotide Sequences (2)2 , 1967 .

[19]  D. A. Smith,et al.  Synthesis of polyadenylate: polyuridylate catalyzed by ribonucleic acid polymerase in the absence of a template. , 1967, Journal of Biological Chemistry.

[20]  F. B. Howard,et al.  Helix formation between polyribonucleotides and purines, purine nucleosides and nucleotides. II. , 1966, Journal of molecular biology.