Thermodynamics of ubiquitin unfolding

The energetics of ubiquitin unfolding have been studied using differential scanning microcalorimetry. For the first time it has been shown directly that the enthalpy of protein unfolding is a nonlinear function of temperature. Thermodynamic parameters of ubiquitin unfolding were correlated with the structure of the protein. The enthalpy of hydrogen bonding in ubiquitin was calculated and compared to that obtained for other proteins. It appears that the energy of hydrogen bonding correlates with the average length of the hydrogen bond in a given protein structure. © 1994 John Wiley & Sons, Inc.

[1]  A. Shrake,et al.  Environment and exposure to solvent of protein atoms. Lysozyme and insulin. , 1973, Journal of molecular biology.

[2]  Dudley H. Williams,et al.  Characterization of a partially denatured state of a protein by two-dimensional NMR: reduction of the hydrophobic interactions in ubiquitin. , 1991, Biochemistry.

[3]  P. Privalov,et al.  Contribution of hydration to protein folding thermodynamics. I. The enthalpy of hydration. , 1993, Journal of molecular biology.

[4]  H. Hinz,et al.  Thermodynamics of unfolding of the alpha-amylase inhibitor tendamistat. Correlations between accessible surface area and heat capacity. , 1992, Journal of molecular biology.

[5]  K. Wilkinson,et al.  Alcohol-induced conformational changes of ubiquitin. , 1986, Archives of biochemistry and biophysics.

[6]  P. Privalov,et al.  Partial molar volumes of polypeptides and their constituent groups in aqueous solution over a broad temperature range , 1990, Biopolymers.

[7]  P. Privalov,et al.  Heat capacity of proteins. I. Partial molar heat capacity of individual amino acid residues in aqueous solution: hydration effect. , 1990, Journal of molecular biology.

[8]  D. Ecker,et al.  New Perspectives on the Structure and Function of Ubiquitin , 1990, Bio/Technology.

[9]  P. Privalov,et al.  Heat capacity and conformation of proteins in the denatured state. , 1989, Journal of molecular biology.

[10]  S. Brown,et al.  Sequential 1H NMR assignments and secondary structure identification of human ubiquitin. , 1987, Biochemistry.

[11]  Clare Woodward,et al.  Thermodynamics of bpti folding , 1993, Protein science : a publication of the Protein Society.

[12]  R. Lenkinski,et al.  Nuclear magnetic resonance studies of the denaturation of ubiquitin. , 1977, Biochimica et biophysica acta.

[13]  K. Dill,et al.  Hydrogen bonding in globular proteins. , 1992, Journal of molecular biology.

[14]  P. Privalov,et al.  Contribution of hydration and non-covalent interactions to the heat capacity effect on protein unfolding. , 1992, Journal of molecular biology.

[15]  P. Privalov,et al.  Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration. , 1993, Journal of molecular biology.

[16]  P. Privalov Stability of proteins: small globular proteins. , 1979, Advances in protein chemistry.

[17]  M. S. Briggs,et al.  Hydrogen exchange in native and alcohol forms of ubiquitin. , 1992, Biochemistry.

[18]  P. Privalov,et al.  Scanning microcalorimetry in studying temperature-induced changes in proteins. , 1986, Methods in enzymology.

[19]  E. Baker,et al.  Hydrogen bonding in globular proteins. , 1984, Progress in biophysics and molecular biology.

[20]  G J Williams,et al.  The Protein Data Bank: a computer-based archival file for macromolecular structures. , 1977, Journal of molecular biology.

[21]  A. Rashin,et al.  Buried surface area, conformational entropy, and protein stability , 1984, Biopolymers.

[22]  O. Ptitsyn,et al.  Determination of stability of the DNA double helix in an aqueous medium , 1969 .

[23]  H. Roder,et al.  Early hydrogen-bonding events in the folding reaction of ubiquitin. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[24]  P. V. von Hippel,et al.  Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.

[25]  C. Chothia The nature of the accessible and buried surfaces in proteins. , 1976, Journal of molecular biology.

[26]  A. Winder,et al.  Correction of light‐scattering errors in spectrophotometric protein determinations , 1971, Biopolymers.

[27]  D. Woolfson,et al.  Protein folding in the absence of the solvent ordering contribution to the hydrophobic interaction. , 1993, Journal of molecular biology.

[28]  C. Bugg,et al.  Structure of ubiquitin refined at 1.8 A resolution. , 1987, Journal of molecular biology.

[29]  P. Privalov,et al.  Heat capacity of proteins. II. Partial molar heat capacity of the unfolded polypeptide chain of proteins: protein unfolding effects. , 1990, Journal of molecular biology.

[30]  A M Lesk,et al.  Interior and surface of monomeric proteins. , 1987, Journal of molecular biology.

[31]  P. Privalov,et al.  A thermodynamic approach to the problem of stabilization of globular protein structure: a calorimetric study. , 1974, Journal of molecular biology.