Quantitative modeling in cell biology: what is it good for?
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[1] R. M. Noyes,et al. Oscillations in chemical systems. IV. Limit cycle behavior in a model of a real chemical reaction , 1974 .
[2] John J. Tyson,et al. The Belousov–Zhabotinskii reaction’ , 1976, Nature.
[3] J. Jarvik,et al. Analysis of flagellar size control using a mutant of Chlamydomonas reinhardtii with a variable number of flagella , 1982, The Journal of cell biology.
[4] L. Segel,et al. On the validity of the steady state assumption of enzyme kinetics. , 1988, Bulletin of mathematical biology.
[5] E. Salmon,et al. How the transition frequencies of microtubule dynamic instability (nucleation, catastrophe, and rescue) regulate microtubule dynamics in interphase and mitosis: analysis using a Monte Carlo computer simulation. , 1993, Molecular biology of the cell.
[6] Lee A. Segel,et al. Mathematics applied to deterministic problems in the natural sciences , 1974, Classics in applied mathematics.
[7] J. Tyson,et al. Checkpoints in the cell cycle from a modeler's perspective. , 1995, Progress in cell cycle research.
[8] S. Leibler,et al. Assembly and positioning of microtubule asters in microfabricated chambers. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[9] J. S. Parkinson,et al. A model of excitation and adaptation in bacterial chemotaxis. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[10] J. Brown. What is Applied Mathematics? , 1997 .
[11] S. Leibler,et al. Robustness in simple biochemical networks , 1997, Nature.
[12] B. Yurke,et al. Measurement of the force-velocity relation for growing microtubules. , 1997, Science.
[13] P. Gönczy,et al. Mechanisms of nuclear positioning. , 1998, Journal of cell science.
[14] Frederick R. Adler,et al. Modeling the Dynamics of Life: Calculus and Probability for Life Scientists , 1998 .
[15] G. Oster,et al. The polymerization ratchet model explains the force-velocity relation for growing microtubules , 1999, European Biophysics Journal.
[16] Katherine C. Chen,et al. Kinetic analysis of a molecular model of the budding yeast cell cycle. , 2000, Molecular biology of the cell.
[17] Julie A. Theriot,et al. Secrets of actin-based motility revealed by a bacterial pathogen , 2000, Nature Reviews Molecular Cell Biology.
[18] W. Marshall,et al. Intraflagellar transport balances continuous turnover of outer doublet microtubules , 2001, The Journal of cell biology.
[19] H. Meinhardt,et al. Pattern formation in Escherichia coli: A model for the pole-to-pole oscillations of Min proteins and the localization of the division site , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[20] M. Howard,et al. Dynamic compartmentalization of bacteria: accurate division in E. coli. , 2001, Physical review letters.
[21] V. Malikov,et al. Self-organization of a radial microtubule array by dynein-dependent nucleation of microtubules , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[22] V. Doye,et al. A Mechanism for Nuclear Positioning in Fission Yeast Based on Microtubule Pushing , 2001, The Journal of cell biology.
[23] J. Howard,et al. Mechanics of Motor Proteins and the Cytoskeleton , 2001 .
[24] Andrew D. Rutenberg,et al. Dynamic Compartmentalization of Bacteria , 2001 .
[25] Leslie M Loew,et al. Computational cell biology: spatiotemporal simulation of cellular events. , 2002, Annual review of biophysics and biomolecular structure.
[26] L. Loew,et al. Systems Analysis of Ran Transport , 2002, Science.
[27] P. Vallotton,et al. Computational analysis of F-actin turnover in cortical actin meshworks using fluorescent speckle microscopy. , 2003, Biophysical journal.
[28] B. Slepchenko,et al. Centrosome positioning in interphase cells , 2003, The Journal of cell biology.
[29] S. V. Aksenov,et al. A spatially extended stochastic model of the bacterial chemotaxis signalling pathway. , 2003, Journal of molecular biology.
[30] Dirk Görlich,et al. Characterization of Ran‐driven cargo transport and the RanGTPase system by kinetic measurements and computer simulation , 2003, The EMBO journal.
[31] J. Vilar,et al. From molecular noise to behavioural variability in a single bacterium , 2004, Nature.
[32] R. Milo,et al. Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[33] Albert Goldbeter,et al. A biochemical oscillator explains several aspects of Myxococcus xanthus behavior during development. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[34] D. Mitchell. Speculations on the evolution of 9+2 organelles and the role of central pair microtubules , 2004, Biology of the cell.
[35] W. Marshall. Cellular length control systems. , 2004, Annual review of cell and developmental biology.
[36] Jonathan B. Alberts,et al. In Silico Reconstitution of Listeria Propulsion Exhibits Nano-Saltation , 2004, PLoS biology.
[37] Katherine C. Chen,et al. Integrative analysis of cell cycle control in budding yeast. , 2004, Molecular biology of the cell.
[38] B. Kholodenko,et al. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades , 2004, The Journal of cell biology.
[39] P. Iglesias,et al. Chemoattractant-induced phosphatidylinositol 3,4,5-trisphosphate accumulation is spatially amplified and adapts, independent of the actin cytoskeleton , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[40] Adam P Arkin,et al. Design and Diversity in Bacterial Chemotaxis: A Comparative Study in Escherichia coli and Bacillus subtilis , 2004, PLoS biology.
[41] Andre Levchenko,et al. Computational cell biology in the post-genomic era , 2004, Molecular Biology Reports.
[42] D. Odde,et al. Mechanochemical model of microtubule structure and self-assembly kinetics. , 2005, Biophysical journal.
[43] W. Marshall,et al. Flagellar length control system: testing a simple model based on intraflagellar transport and turnover. , 2004, Molecular biology of the cell.
[44] Marvin Cassman,et al. Barriers to progress in systems biology , 2005, Nature.
[45] Jason M. Haugh,et al. Quantitative elucidation of a distinct spatial gradient-sensing mechanism in fibroblasts , 2005, The Journal of cell biology.
[46] R. Vallee,et al. How dynein helps the cell find its center: a servomechanical model. , 2005, Trends in cell biology.
[47] Eric N. Cytrynbaum,et al. Centering of a radial microtubule array by translocation along microtubules spontaneously nucleated in the cytoplasm , 2005, Nature Cell Biology.
[48] Andre Levchenko,et al. Dynamic Properties of Network Motifs Contribute to Biological Network Organization , 2005, PLoS biology.
[49] G. Riddick,et al. A systems analysis of importin-α–β mediated nuclear protein import , 2005, The Journal of cell biology.
[50] B. Paschal,et al. Mechanisms of Receptor‐Mediated Nuclear Import and Nuclear Export , 2005, Traffic.
[51] A. Kimura,et al. Computer simulations and image processing reveal length-dependent pulling force as the primary mechanism for C. elegans male pronuclear migration. , 2005, Developmental cell.
[52] R. Iyengar,et al. Toward predictive models of mammalian cells. , 2005, Annual review of biophysics and biomolecular structure.
[53] T. Misteli. Faculty Opinions recommendation of A systems analysis of importin-{alpha}-{beta} mediated nuclear protein import. , 2005 .
[54] T. Pollard,et al. Reconstitution of the transition from lamellipodium to filopodium in a membrane-free system. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[55] A. Mezer,et al. Systematic search for the rate constants that control the exocytotic process from chromaffin cells by a genetic algorithm. , 2006, Biochimica et biophysica acta.
[56] Jan Ellenberg,et al. Dissecting the contribution of diffusion and interactions to the mobility of nuclear proteins. , 2006, Biophysical journal.
[57] T. Pollard,et al. Control of the Assembly of ATP- and ADP-Actin by Formins and Profilin , 2006, Cell.
[58] B. Palsson,et al. The model organism as a system: integrating 'omics' data sets , 2006, Nature Reviews Molecular Cell Biology.
[59] B. Kholodenko. Cell-signalling dynamics in time and space , 2006, Nature Reviews Molecular Cell Biology.
[60] H. Kitano,et al. A comprehensive map of the toll-like receptor signaling network , 2006, Molecular systems biology.
[61] J. Stock,et al. Systems biology of bacterial chemotaxis. , 2006, Current opinion in microbiology.
[62] D. Lauffenburger,et al. The Response of Human Epithelial Cells to TNF Involves an Inducible Autocrine Cascade , 2006, Cell.
[63] A. Mogilner,et al. Modeling mitosis. , 2006, Trends in cell biology.
[64] Alex Mogilner,et al. On the edge: modeling protrusion. , 2006, Current opinion in cell biology.
[65] T. Pollard,et al. Model of formin-associated actin filament elongation. , 2006, Molecular cell.
[66] Timothy C Elston,et al. Causal mapping as a tool to mechanistically interpret phenomena in cell motility: application to cortical oscillations in spreading cells. , 2006, Cell motility and the cytoskeleton.
[67] P. Haccou. Mathematical Models of Biology , 2022 .