Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei
暂无分享,去创建一个
Zhenglin Du | B. Henrissat | Q. Yan | Shaoqing Yang | Zhengqiang Jiang | Bing Zhang | Shangwu Chen | Guoqiang Zhang | P. Zhou | Chin-Fu Chen | Y. Tang
[1] I. Guarniero. How Many Species Are There on Earth and in the Ocean? (PLOS Biology) , 2014 .
[2] Zhenglin Du,et al. Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei , 2014, BMC Genomics.
[3] X. Duan,et al. Biochemical Characterization of a First Fungal Esterase from Rhizomucor miehei Showing High Efficiency of Ester Synthesis , 2013, PloS one.
[4] M. Alam,et al. Xylanase Superproducer: Genome Sequence of a Compost-Loving Thermophilic Fungus, Thermomyces lanuginosus Strain SSBP , 2013, Genome Announcements.
[5] Alan M. Moses,et al. Sequencing and annotation of the Ophiostoma ulmi genome , 2013, BMC Genomics.
[6] Justin Powlowski,et al. A molecular phylogeny of thermophilic fungi. , 2012, Fungal biology.
[7] J. Cui,et al. Purification and characterization of a novel β-1,3-1,4-glucanase (lichenase) from thermophilic Rhizomucor miehei with high specific activity and its gene sequence. , 2012, Journal of agricultural and food chemistry.
[8] Justin Powlowski,et al. Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris , 2011, Nature Biotechnology.
[9] C. Mora,et al. How Many Species Are There on Earth and in the Ocean? , 2011, PLoS biology.
[10] Peer Bork,et al. Insight into Structure and Assembly of the Nuclear Pore Complex by Utilizing the Genome of a Eukaryotic Thermophile , 2011, Cell.
[11] S. Gutiérrez,et al. Functional Analysis of the Trichoderma harzianum nox1 Gene, Encoding an NADPH Oxidase, Relates Production of Reactive Oxygen Species to Specific Biocontrol Activity against Pythium ultimum , 2011, Applied and Environmental Microbiology.
[12] A. Boraston,et al. Analysis of a New Family of Widely Distributed Metal-independent α-Mannosidases Provides Unique Insight into the Processing of N-Linked Glycans* , 2011, The Journal of Biological Chemistry.
[13] Guo-Ping Zhao,et al. Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum , 2011, PLoS genetics.
[14] A. Geetha,et al. Bacterial Lipases as Potential Industrial Biocatalysts: An Overview , 2011 .
[15] Bernard Henrissat,et al. Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level , 2011, BMC Genomics.
[16] J. Ni,et al. Identification of activity related amino acid mutations of a GH9 termite cellulase. , 2010, Bioresource technology.
[17] M. Faramarzi,et al. Production, physiochemical and antimicrobial properties of fungal chitosan from Rhizomucor miehei and Mucor racemosus. , 2010, International journal of biological macromolecules.
[18] R. Rodrigues,et al. Lipase from Rhizomucor miehei as an industrial biocatalyst in chemical process , 2010 .
[19] E. Fawzi. Highly thermostable purified xylanase from Rhizomucor miehei NRRL 3169 , 2010, Annals of Microbiology.
[20] R. Muzzarelli,et al. Chitin Deacetylases: Properties and Applications , 2010, Marine drugs.
[21] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..
[22] Xuegong Zhang,et al. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data , 2010, Bioinform..
[23] Nansheng Chen,et al. Large synteny blocks revealed between Caenorhabditis elegans and Caenorhabditis briggsae genomes using OrthoCluster , 2010, BMC Genomics.
[24] Ashraf S. Ibrahim,et al. Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication , 2009, PLoS genetics.
[25] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[26] Brandi L. Cantarel,et al. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics , 2008, Nucleic Acids Res..
[27] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[28] Isaac Y. Ho,et al. Corrigendum: Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) , 2008, Nature Biotechnology.
[29] Peter J. Punt,et al. Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles , 2008, Molecular Genetics and Genomics.
[30] V. Seidl. Chitinases of filamentous fungi: a large group of diverse proteins with multiple physiological functions , 2008 .
[31] A. Lewandowska,et al. Chaperones in control of protein disaggregation , 2008, The EMBO journal.
[32] U. Ali. Production and some Properties of Fibrinolytic enzyme from Rhizomucor miehei (Cooney & Emerson) Schipper , 2008 .
[33] Bernard Henrissat,et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) , 2008, Nature Biotechnology.
[34] J. Poulain,et al. The genome sequence of the model ascomycete fungus Podospora anserina , 2008, Genome Biology.
[35] P. Hu,et al. Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens , 2007, Proceedings of the National Academy of Sciences.
[36] Michael Weiss,et al. A higher-level phylogenetic classification of the Fungi. , 2007, Mycological research.
[37] Kiyoshi Asai,et al. Genomics of Aspergillus oryzae , 2007, Bioscience, biotechnology, and biochemistry.
[38] J. A. Roubos,et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 , 2007, Nature Biotechnology.
[39] R. Voellmy,et al. Chaperone regulation of the heat shock protein response. , 2007, Advances in experimental medicine and biology.
[40] Patrick Achard,et al. F-box proteins everywhere. , 2006, Current opinion in plant biology.
[41] M. Berbee,et al. Dating divergences in the Fungal Tree of Life: review and new analyses , 2006 .
[42] M. Berbee,et al. Dating divergences in the Fungal Tree of Life: review and new analyses. , 2006, Mycologia.
[43] S. Roussos,et al. Lipase from the thermotolerant fungus Rhizopus homothallicus is more thermostable when produced using solid state fermentation than liquid fermentation procedures , 2006 .
[44] Burkhard Morgenstern,et al. AUGUSTUS: ab initio prediction of alternative transcripts , 2006, Nucleic Acids Res..
[45] Nello Cristianini,et al. CAFE: a computational tool for the study of gene family evolution , 2006, Bioinform..
[46] A. D’Andrea,et al. Regulation of DNA repair by ubiquitylation , 2006, Nature Reviews Molecular Cell Biology.
[47] L. Thim,et al. Rhizomucor miehei triglyceride lipase is synthesized as a precursor , 1988, Lipids.
[48] William H. Majoros,et al. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus , 2005, Nature.
[49] M. Nielsen,et al. Role of HSF activation for resistance to heat, cold and high-temperature knock-down. , 2005, Journal of insect physiology.
[50] A. Mercer,et al. F-Box-Like Domains are Present in Most Poxvirus Ankyrin Repeat Proteins , 2005, Virus Genes.
[51] Li-Jun Ma,et al. Genomics of the fungal kingdom: insights into eukaryotic biology. , 2005, Genome research.
[52] Katherine H. Huang,et al. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 , 2004, Nature Biotechnology.
[53] Nansheng Chen,et al. Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences , 2009, Current protocols in bioinformatics.
[54] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[55] Jesper Givskov Sørensen,et al. The evolutionary and ecological role of heat shock proteins , 2003 .
[56] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[57] E. Mauceli,et al. The genome sequence of the filamentous fungus Neurospora crassa , 2003, Nature.
[58] Michael J. Sanderson,et al. R8s: Inferring Absolute Rates of Molecular Evolution, Divergence times in the Absence of a Molecular Clock , 2003, Bioinform..
[59] F. Hartl,et al. Molecular Chaperones in the Cytosol: from Nascent Chain to Folded Protein , 2002, Science.
[60] U. Bornscheuer. Microbial carboxyl esterases: classification, properties and application in biocatalysis. , 2002, FEMS microbiology reviews.
[61] Martin Vingron,et al. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing , 2002, Bioinform..
[62] R. Maheshwari,et al. Thermophilic Fungi: Their Physiology and Enzymes , 2000, Microbiology and Molecular Biology Reviews.
[63] M. Rao,et al. Molecular and Biotechnological Aspects of Microbial Proteases , 1998, Microbiology and Molecular Biology Reviews.
[64] M. Harboe. Rhizomucor miehei aspartic proteinases having improved properties. , 1998, Advances in experimental medicine and biology.
[65] J. Quail,et al. Crystal structure of the aspartic proteinase from Rhizomucor miehei at 2.15 A resolution. , 1997, Journal of molecular biology.
[66] M. T. Hampton. Atlas of Clinical Fungi , 1997 .
[67] W. L. Jorgensen,et al. Mechanism for the rotamase activity of FK506 binding protein from molecular dynamics simulations. , 1993, Biochemistry.
[68] C. Colaco,et al. Extraordinary Stability of Enzymes Dried in Trehalose: Simplified Molecular Biology , 1992, Bio/Technology.
[69] C. Yanofsky,et al. An electrophoretic karyotype of Neurospora crassa , 1988, Molecular and cellular biology.
[70] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[71] M. Schipper. On certain species of mucor with a key to all accepted species ; On the genera rhizomucor and parasitella , 1978 .