NMR structure of a parallel homotrimeric coiled coil

The solution structure of the oligomerization domain of cartilage matrix protein (also known as matrilin-1) has been determined by heteronuclear NMR spectroscopy. The domain folds into a parallel, disulfide-linked, three-stranded, α-helical coiled coil, spanning five heptad repeats in the amino acid sequence. The sequence of the first two heptad repeats shows some deviations from the consensus of hydrophobic and hydrophilic residue preferences. While the corresponding region of the coiled coil has a higher intrinsic flexibility, backbone α-helix and superhelix parameters are consistent with a regular coiled coil structure.

[1]  D. Parry,et al.  α‐Helical coiled coils and bundles: How to design an α‐helical protein , 1990 .

[2]  D. Belluoccio,et al.  Matrilin‐3 from chicken cartilage , 1997, FEBS letters.

[3]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[4]  R. Kammerer Alpha-helical coiled-coil oligomerization domains in extracellular proteins. , 1997, Matrix biology : journal of the International Society for Matrix Biology.

[5]  Francis Crick,et al.  The Fourier transform of a coiled-coil , 1953 .

[6]  A. Lupas Coiled coils: new structures and new functions. , 1996, Trends in biochemical sciences.

[7]  R. Kammerer,et al.  Heteronuclear NMR assignments and secondary structure of the coiled coil trimerization domain from cartilage matrix protein in oxidized and reduced forms , 1997, Protein science : a publication of the Protein Society.

[8]  D. Heinegård,et al.  Purification and structural characterization of a cartilage matrix protein. , 1981, The Biochemical journal.

[9]  D. Heinegård,et al.  Matrix proteins bound to associatively prepared proteoglycans from bovine cartilage. , 1979, The Biochemical journal.

[10]  J. Richardson,et al.  The anatomy and taxonomy of protein structure. , 1981, Advances in protein chemistry.

[11]  K. Beck,et al.  The C-terminal domain of cartilage matrix protein assembles into a triple-stranded alpha-helical coiled-coil structure. , 1996, Journal of molecular biology.

[12]  L. Kay,et al.  A pulsed field gradient isotope‐filtered 3D 13C HMQC‐NOESY experiment for extracting intermolecular NOE contacts in molecular complexes , 1994, FEBS letters.

[13]  K Wüthrich,et al.  Pseudo-structures for the 20 common amino acids for use in studies of protein conformations by measurements of intramolecular proton-proton distance constraints with nuclear magnetic resonance. , 1983, Journal of molecular biology.

[14]  P. Goetinck,et al.  The Role of Coiled-coil α-Helices and Disulfide Bonds in the Assembly and Stabilization of Cartilage Matrix Protein Subunits , 1995, The Journal of Biological Chemistry.

[15]  Axel T. Brunger,et al.  X-PLOR Version 3.1: A System for X-ray Crystallography and NMR , 1992 .

[16]  M. Paulsson,et al.  Primary structure of matrilin‐3, a new member of a family of extracellular matrix proteins related to cartilage matrix protein (matrilin‐1) and von Willebrand factor 1 , 1997, FEBS letters.

[17]  D. Woolfson,et al.  Buried polar residues and structural specificity in the GCN4 leucine zipper , 1996, Nature Structural Biology.

[18]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[19]  F. Deák,et al.  Primary Structure and Expression of Matrilin-2, the Closest Relative of Cartilage Matrix Protein within the von Willebrand Factor Type A-like Module Superfamily* , 1997, The Journal of Biological Chemistry.

[20]  F. Crick,et al.  The packing of α‐helices: simple coiled‐coils , 1953 .

[21]  Tom Alber,et al.  Crystal structure of an isoleucine-zipper trimer , 1994, Nature.

[22]  L. Kay,et al.  Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta. , 1989, Biochemistry.

[23]  Determination of the structure of symmetric coiled-coil proteins from NMR data: application of the leucine zipper proteins Jun and GCN4. , 1993, Protein engineering.

[24]  R. N. Jenkins,et al.  Structure and chromosomal location of the human gene encoding cartilage matrix protein. , 1990, The Journal of biological chemistry.

[25]  K. Wüthrich NMR of proteins and nucleic acids , 1988 .

[26]  A M Gronenborn,et al.  Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution. , 1990, Science.

[27]  A. Palmer,et al.  Probing molecular motion by NMR. , 1997, Current opinion in structural biology.

[28]  D. Studer,et al.  Cloning, sequencing and expression analysis of mouse cartilage matrix protein cDNA. , 1996, European journal of biochemistry.

[29]  P E Wright,et al.  Use of chemical shifts and coupling constants in nuclear magnetic resonance structural studies on peptides and proteins. , 1994, Methods in enzymology.

[30]  T F Havel,et al.  The solution structure of eglin c based on measurements of many NOEs and coupling constants and its comparison with X‐ray structures , 1992, Protein science : a publication of the Protein Society.