Diagen: A Model-driven Framework for Integrating Bioinformatic Tools

[1]  Andreas Prlic,et al.  BioJava: an open-source framework for bioinformatics in 2012 , 2012, Bioinform..

[2]  Oscar Pastor,et al.  Applying Conceptual Modeling to Alignment Tools One Step towards the Automation of DNA Sequence Analysis , 2011, BIOINFORMATICS.

[3]  Karen Eilbeck,et al.  A standard variation file format for human genome sequences , 2010, Genome Biology.

[4]  Oscar Pastor,et al.  Enforcing Conceptual Modeling to improve the understanding of human genome , 2010, 2010 Fourth International Conference on Research Challenges in Information Science (RCIS).

[5]  Tim J. Stevens,et al.  MEMOPS: Data modelling and automatic code generation , 2010, J. Integr. Bioinform..

[6]  Nicole Rusk.  Focus on next-generation sequencing data analysis , 2009, Nature Methods.

[7]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[8]  Bartek Wilczynski,et al.  Biopython: freely available Python tools for computational molecular biology and bioinformatics , 2009, Bioinform..

[9]  Andreas Prlic,et al.  Sequence analysis , 2003 .

[10]  Jayaraman Ks.  HIV vaccine controversy , 2008 .

[11]  N. Siva.  1000 Genomes project , 2008, Nature Biotechnology.

[12]  Oscar Pastor,et al.  Model-Based Engineering Applied to the Interpretation of the Human Genome , 2008, The Evolution of Conceptual Modeling.

[13]  Roland H. Kaschek,et al.  On the evolution of conceptual modeling , 2008, The Evolution of Conceptual Modeling.

[14]  Norman W. Paton,et al.  Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it , 2006, BMC Bioinformatics.

[15]  Carole A. Goble,et al.  Taverna: a tool for building and running workflows of services , 2006, Nucleic Acids Res..

[16]  R. Durbin,et al.  The Sequence Ontology: a tool for the unification of genome annotations , 2005, Genome Biology.

[17]  Matthew R. Pocock,et al.  The Bioperl toolkit: Perl modules for the life sciences. , 2002, Genome research.

[18]  G. Ginsburg,et al.  The path to personalized medicine. , 2002, Current opinion in chemical biology.

[19]  Philip Lijnzaad,et al.  The Ensembl genome database project , 2002, Nucleic Acids Res..

[20]  S. Antonarakis,et al.  Mutation nomenclature extensions and suggestions to describe complex mutations: A discussion , 2000 .

[21]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.