Detection of prokaryotic mRNA signifies microbial viability and promotes immunity

This corrects the article DOI: 10.1038/nature10072

[1]  Jean YH Yang,et al.  Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.

[2]  S. Akira,et al.  Bacterial RNA and small antiviral compounds activate caspase-1 through cryopyrin/Nalp3 , 2006, Nature.

[3]  D. Portnoy,et al.  Patterns of pathogenesis: discrimination of pathogenic and nonpathogenic microbes by the innate immune system. , 2009, Cell host & microbe.

[4]  P. Bevilacqua,et al.  A brilliant disguise for self RNA: 5’-end and internal modifications of primary transcripts suppress elements of innate immunity , 2008, RNA biology.

[5]  L. O’Neill,et al.  New Insights into the Regulation of Signalling by Toll-Like Receptors and Nod-Like Receptors , 2010, Journal of Innate Immunity.

[6]  Terence P. Speed,et al.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..

[7]  Houping Ni,et al.  Suppression of RNA recognition by Toll-like receptors: the impact of nucleoside modification and the evolutionary origin of RNA. , 2005, Immunity.

[8]  Michael J. Davis,et al.  Technical Advance: caspase‐1 activation and IL‐1β release correlate with the degree of lysosome damage, as illustrated by a novel imaging method to quantify phagolysosome damage , 2010, Journal of leukocyte biology.

[9]  D. Portnoy,et al.  c-di-AMP Secreted by Intracellular Listeria monocytogenes Activates a Host Type I Interferon Response , 2010, Science.

[10]  J. Blander,et al.  Innate immune recognition of infected apoptotic cells directs TH17 cell differentiation , 2009, Nature.

[11]  S. Akira,et al.  Pattern Recognition Receptors and Inflammation , 2010, Cell.

[12]  T. Taniguchi,et al.  Distinct and Essential Roles of Transcription Factors IRF-3 and IRF-7 in Response to Viruses for IFN-α/β Gene Induction , 2000 .

[13]  J. Belasco All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay , 2010, Nature Reviews Molecular Cell Biology.

[14]  H. Hof,et al.  Failure of killed Listeria monocytogenes vaccine to produce protective immunity , 1982, Nature.

[15]  J. Rehwinkel,et al.  RIGorous Detection: Exposing Virus Through RNA Sensing , 2010, Science.

[16]  A. Aderem,et al.  Staphylococcus aureus evades lysozyme-based peptidoglycan digestion that links phagocytosis, inflammasome activation, and IL-1beta secretion. , 2010, Cell host & microbe.

[17]  D. Portnoy,et al.  Listeriolysin O: a phagosome-specific lysin. , 2007, Microbes and infection.

[18]  J. Bertin,et al.  Critical role for NALP3/CIAS1/Cryopyrin in innate and adaptive immunity through its regulation of caspase-1. , 2006, Immunity.

[19]  M. Su,et al.  Altered cytokine export and apoptosis in mice deficient in interleukin-1 beta converting enzyme. , 1995, Science.

[20]  J. Tschopp,et al.  A role for mitochondria in NLRP3 inflammasome activation , 2011, Nature.

[21]  Akiko Iwasaki,et al.  Inflammasomes as mediators of immunity against influenza virus. , 2011, Trends in immunology.

[22]  H. Pahl,et al.  Activators and target genes of Rel/NF-kappaB transcription factors. , 1999, Oncogene.

[23]  R. Medzhitov Approaching the asymptote: 20 years later. , 2009, Immunity.

[24]  Rekha Seshadri,et al.  Bacterial Genomics and Pathogen Evolution , 2006, Cell.

[25]  R. Vance,et al.  Identification of Host Cytosolic Sensors and Bacterial Factors Regulating the Type I Interferon Response to Legionella pneumophila , 2009, PLoS pathogens.

[26]  R. Myers,et al.  Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data , 2005, Nucleic acids research.

[27]  P. Sansonetti,et al.  Cloning of plasmid DNA sequences involved in invasion of HeLa cells by Shigella flexneri , 1985, Infection and immunity.

[28]  K. Rock,et al.  Silica crystals and aluminum salts activate the NALP3 inflammasome through phagosomal destabilization , 2008, Nature Immunology.

[29]  Maurille J. Fournier,et al.  The 3D rRNA modification maps database: with interactive tools for ribosome analysis , 2007, Nucleic Acids Res..

[30]  Jacob Glenting,et al.  Live bacterial vaccines – a review and identification of potential hazards , 2006, Microbial cell factories.

[31]  T. Speed,et al.  Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.

[32]  John D. Storey,et al.  Statistical significance for genomewide studies , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[33]  D. Portnoy,et al.  Bacterial Ligands Generated in a Phagosome Are Targets of the Cytosolic Innate Immune System , 2007, PLoS pathogens.

[34]  F. Heffron,et al.  Induction of Salmonella stress proteins upon infection of macrophages. , 1990, Science.

[35]  Samuel I. Miller,et al.  Salmonellae interplay with host cells , 2008, Nature Reviews Microbiology.

[36]  Sam Forster,et al.  INTERFEROME: the database of interferon regulated genes , 2008, Nucleic Acids Res..

[37]  I. Kawamura,et al.  Antigen provoking gamma interferon production in response to Mycobacterium bovis BCG and functional difference in T-cell responses to this antigen between viable and killed BCG-immunized mice , 1994, Infection and immunity.

[38]  M. Goldberg,et al.  Regulation of IcsP, the Outer Membrane Protease of the Shigella Actin Tail Assembly Protein IcsA, by Virulence Plasmid Regulators VirF and VirB , 2004, Journal of bacteriology.

[39]  Philip C. Bevilacqua,et al.  Incorporation of pseudouridine into mRNA enhances translation by diminishing PKR activation , 2010, Nucleic acids research.

[40]  Gunther Hartmann,et al.  5'-Triphosphate RNA Is the Ligand for RIG-I , 2006, Science.

[41]  W. Liang,et al.  TM4 microarray software suite. , 2006, Methods in enzymology.

[42]  C. Cheers,et al.  How do macrophages distinguish the living from the dead? , 1996, Trends in microbiology.

[43]  S. Ghosh,et al.  Phytol-based novel adjuvants in vaccine formulation: 2. assessment of efficacy in the induction of protective immune responses to lethal bacterial infections in mice , 2006, Journal of immune based therapies and vaccines.

[44]  Mario Medvedovic,et al.  Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments , 2006, BMC Bioinformatics.

[45]  A I Saeed,et al.  TM4: a free, open-source system for microarray data management and analysis. , 2003, BioTechniques.

[46]  Michael J. Davis,et al.  Sensing prokaryotic mRNA signifies microbial viability and promotes immunity , 2011, Nature.

[47]  S. Mariathasan,et al.  Inflammasome adaptors and sensors: intracellular regulators of infection and inflammation , 2007, Nature Reviews Immunology.

[48]  J. Hearst,et al.  Killed but metabolically active microbes: a new vaccine paradigm for eliciting effector T-cell responses and protective immunity , 2005, Nature Medicine.

[49]  R. Medzhitov,et al.  Regulation of Phagosome Maturation by Signals from Toll-Like Receptors , 2004, Science.