Protein-protein interactions in the allosteric regulation of protein kinases.

Protein-protein interactions involving the catalytic domain of protein kinases are likely to be generally important in the regulation of signal transduction pathways, but are rather sparsely represented in crystal structures. Recently determined structures of the kinase domains of the mitogen-activated protein kinase Fus3, the RNA-dependent kinase PKR, the epidermal growth factor receptor and Ca(2+)/calmodulin-dependent protein kinase II have revealed unexpected and distinct mechanisms by which interactions with the catalytic domain can modulate kinase activity.

[1]  J. Janin,et al.  A dissection of specific and non-specific protein-protein interfaces. , 2004, Journal of molecular biology.

[2]  M. T. Davison,et al.  The calmodulin-dependent glycogen synthase kinase from rabbit skeletal muscle. Purification, subunit structure and substrate specificity. , 1983, European journal of biochemistry.

[3]  Andy Hudmon,et al.  Structure-function of the multifunctional Ca2+/calmodulin-dependent protein kinase II. , 2002, The Biochemical journal.

[4]  G. Superti-Furga,et al.  Structural Basis for the Autoinhibition of c-Abl Tyrosine Kinase , 2003, Cell.

[5]  P. Lochhead,et al.  Activation-Loop Autophosphorylation Is Mediated by a Novel Transitional Intermediate Form of DYRKs , 2005, Cell.

[6]  S. Harrison,et al.  Crystal structures of c-Src reveal features of its autoinhibitory mechanism. , 1999, Molecular cell.

[7]  L. Tong,et al.  BBRC Crystal structure of the protein kinase domain of yeast AMP-activated protein kinase Snf 1 , 2005 .

[8]  D. Morrison,et al.  dDYRK2: a novel dual-specificity tyrosine-phosphorylation-regulated kinase in Drosophila. , 2003, The Biochemical journal.

[9]  L. Johnson,et al.  The crystal structure of a phosphorylase kinase peptide substrate complex: kinase substrate recognition , 1997, The EMBO journal.

[10]  L. Johnson,et al.  Protein Kinase Inhibitors: Insights into Drug Design from Structure , 2004, Science.

[11]  L. Tong,et al.  Crystal structure of the protein kinase domain of yeast AMP-activated protein kinase Snf1. , 2005, Biochemical and biophysical research communications.

[12]  Susan S. Taylor,et al.  Regulation of protein kinases; controlling activity through activation segment conformation. , 2004, Molecular cell.

[13]  M. Sliwkowski,et al.  Structure of the Epidermal Growth Factor Receptor Kinase Domain Alone and in Complex with a 4-Anilinoquinazoline Inhibitor* , 2002, The Journal of Biological Chemistry.

[14]  A. Nairn,et al.  Structural Basis for the Autoinhibition of Calcium/Calmodulin-Dependent Protein Kinase I , 1996, Cell.

[15]  J. Zheng,et al.  Structure of a peptide inhibitor bound to the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. , 1991, Science.

[16]  Sung-Hou Kim,et al.  Crystal structure of cyclin-dependent kinase 2 , 1993, Nature.

[17]  Martin E M Noble,et al.  The Role of the Phospho-CDK2/Cyclin A Recruitment Site in Substrate Recognition* , 2006, Journal of Biological Chemistry.

[18]  N. Sonenberg,et al.  Double-stranded-RNA-dependent protein kinase and TAR RNA-binding protein form homo- and heterodimers in vivo. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[19]  Arvin C. Dar,et al.  Mechanistic Link between PKR Dimerization, Autophosphorylation, and eIF2α Substrate Recognition , 2005, Cell.

[20]  M. Waxham,et al.  Three-dimensional Reconstructions of Calcium/Calmodulin-dependent (CaM) Kinase IIα and Truncated CaM Kinase IIα Reveal a Unique Organization for Its Structural Core and Functional Domains* , 2000, The Journal of Biological Chemistry.

[21]  John M Koomen,et al.  Comparative analyses of the three-dimensional structures and enzymatic properties of alpha, beta, gamma and delta isoforms of Ca2+-calmodulin-dependent protein kinase II. , 2004, The Journal of biological chemistry.

[22]  Angus C Nairn,et al.  Crystal structure of a tetradecameric assembly of the association domain of Ca2+/calmodulin-dependent kinase II. , 2003, Molecular cell.

[23]  Krystal J Alligood,et al.  A Unique Structure for Epidermal Growth Factor Receptor Bound to GW572016 (Lapatinib) , 2004, Cancer Research.

[24]  John Kuriyan,et al.  A Src-Like Inactive Conformation in the Abl Tyrosine Kinase Domain , 2006, PLoS biology.

[25]  P. Alzari,et al.  Crystal Structure of the Catalytic Domain of the PknB Serine/Threonine Kinase from Mycobacterium tuberculosis * , 2003, The Journal of Biological Chemistry.

[26]  Angus C. Nairn,et al.  Structure of the Autoinhibited Kinase Domain of CaMKII and SAXS Analysis of the Holoenzyme , 2005, Cell.

[27]  Dan Wang,et al.  Comparative Analyses of the Three-dimensional Structures and Enzymatic Properties of α, β, γ, and δ Isoforms of Ca2+-Calmodulin-dependent Protein Kinase II* , 2004, Journal of Biological Chemistry.

[28]  S. Berger,et al.  Structure and dimerization of the kinase domain from yeast Snf1, a member of the Snf1/AMPK protein family. , 2006, Structure.

[29]  E. Morris,et al.  Oligomeric structure of alpha-calmodulin-dependent protein kinase II. , 2001, Journal of molecular biology.

[30]  A. Hinnebusch,et al.  Autophosphorylation in the Activation Loop Is Required for Full Kinase Activity In Vivo of Human and Yeast Eukaryotic Initiation Factor 2α Kinases PKR and GCN2 , 1998, Molecular and Cellular Biology.

[31]  P. Wedegaertner,et al.  Activation of the purified protein tyrosine kinase domain of the epidermal growth factor receptor. , 1989, The Journal of biological chemistry.

[32]  Kornelia Polyak,et al.  Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex , 1995, Nature.

[33]  A. Hinnebusch,et al.  Structural requirements for double-stranded RNA binding, dimerization, and activation of the human eIF-2 alpha kinase DAI in Saccharomyces cerevisiae , 1995, Molecular and cellular biology.

[34]  John Kuriyan,et al.  An Allosteric Mechanism for Activation of the Kinase Domain of Epidermal Growth Factor Receptor , 2006, Cell.

[35]  A. Hinnebusch,et al.  Structural Basis for Autoinhibition and Mutational Activation of Eukaryotic Initiation Factor 2α Protein Kinase GCN2*[boxs] , 2005, Journal of Biological Chemistry.

[36]  J. Zheng,et al.  Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. , 1991, Science.

[37]  B. Williams,et al.  PKR; a sentinel kinase for cellular stress , 1999, Oncogene.

[38]  Y. Yarden,et al.  Self-phosphorylation of epidermal growth factor receptor: evidence for a model of intermolecular allosteric activation. , 1987, Biochemistry.

[39]  David Carling,et al.  The AMP-activated protein kinase cascade--a unifying system for energy control. , 2004, Trends in biochemical sciences.

[40]  S. Shaltiel,et al.  Snapping of the carboxyl terminal tail of the catalytic subunit of PKA onto its core: characterization of the sites by mutagenesis. , 2000, Biochemistry.

[41]  Y. Yarden The EGFR family and its ligands in human cancer. signalling mechanisms and therapeutic opportunities. , 2001, European journal of cancer.

[42]  S. Hubbard,et al.  Crystal structure of the tyrosine kinase domain of the human insulin receptor , 1994, Nature.

[43]  G. Cheetham,et al.  Structural basis for the interaction of TAK1 kinase with its activating protein TAB1. , 2005, Journal of molecular biology.

[44]  I. Maruyama,et al.  Activation of preformed EGF receptor dimers by ligand-induced rotation of the transmembrane domain. , 2001, Journal of molecular biology.

[45]  Sarel J Fleishman,et al.  A putative mechanism for downregulation of the catalytic activity of the EGF receptor via direct contact between its kinase and C-terminal domains. , 2004, Structure.

[46]  B. Carpick,et al.  Characterization of the Solution Complex between the Interferon-induced, Double-stranded RNA-activated Protein Kinase and HIV-I Trans-activating Region RNA* , 1997, The Journal of Biological Chemistry.

[47]  J. Kuriyan,et al.  The Conformational Plasticity of Protein Kinases , 2002, Cell.

[48]  T. Pawson,et al.  Assembly of Cell Regulatory Systems Through Protein Interaction Domains , 2003, Science.

[49]  Wenqing,et al.  Three-dimensional structure of the tyrosine kinase cSrc , 2022 .

[50]  Michael A Robinson,et al.  The active conformation of the PAK1 kinase domain. , 2005, Structure.

[51]  P. De Koninck,et al.  Sensitivity of CaM kinase II to the frequency of Ca2+ oscillations. , 1998, Science.

[52]  D. Stern,et al.  Activation of Neu (ErbB-2) Mediated by Disulfide Bond-Induced Dimerization Reveals a Receptor Tyrosine Kinase Dimer Interface , 1998, Molecular and Cellular Biology.

[53]  T. Kozasa,et al.  Snapshot of Activated G Proteins at the Membrane: The Gαq-GRK2-Gßγ Complex , 2005, Science.

[54]  K. Lee,et al.  Mirk protein kinase is a mitogen-activated protein kinase substrate that mediates survival of colon cancer cells. , 2000, Cancer Research.

[55]  John Kuriyan,et al.  Crystal structure of the Src family tyrosine kinase Hck , 1997, Nature.

[56]  S. Hubbard Crystal structure of the activated insulin receptor tyrosine kinase in complex with peptide substrate and ATP analog , 1997, The EMBO journal.

[57]  Jonathan Chernoff,et al.  A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases. , 2006, Journal of molecular biology.

[58]  P. Nurse,et al.  Fission yeast Pom1p kinase activity is cell cycle regulated and essential for cellular symmetry during growth and division , 2001, The EMBO journal.

[59]  A. Schürmann,et al.  Dyrk, a Dual Specificity Protein Kinase with Unique Structural Features Whose Activity Is Dependent on Tyrosine Residues between Subdomains VII and VIII (*) , 1996, The Journal of Biological Chemistry.

[60]  T. Blundell,et al.  Identification of the autophosphorylation sites and characterization of their effects in the protein kinase DYRK1A. , 2001, The Biochemical journal.

[61]  Tom Alber,et al.  Structure of Mycobacterium tuberculosis PknB supports a universal activation mechanism for Ser/Thr protein kinases , 2003, Nature Structural Biology.

[62]  B. Kemp,et al.  Insights into autoregulation from the crystal structure of twitchin kinase , 1994, Nature.

[63]  T. Hunter,et al.  The Protein Kinase Complement of the Human Genome , 2002, Science.

[64]  P. Seeburg,et al.  Structural mechanism for STI-571 inhibition of abelson tyrosine kinase. , 2000, Science.

[65]  M. Shibuya,et al.  A highly conserved tyrosine residue at codon 845 within the kinase domain is not required for the transforming activity of human epidermal growth factor receptor. , 1992, Biochemical and biophysical research communications.

[66]  Y. Yarden,et al.  Untangling the ErbB signalling network , 2001, Nature Reviews Molecular Cell Biology.

[67]  Arvin C. Dar,et al.  Higher-Order Substrate Recognition of eIF2α by the RNA-Dependent Protein Kinase PKR , 2005, Cell.

[68]  A. Ullrich,et al.  Aggregation-induced activation of the epidermal growth factor receptor protein tyrosine kinase. , 1993, Biochemistry.

[69]  A. Nairn,et al.  Oligomerization states of the association domain and the holoenyzme of Ca2+/CaM kinase II , 2006, The FEBS journal.

[70]  A. Hinnebusch,et al.  Binding of Double-stranded RNA to Protein Kinase PKR Is Required for Dimerization and Promotes Critical Autophosphorylation Events in the Activation Loop* , 2001, The Journal of Biological Chemistry.

[71]  J. Kuriyan,et al.  Crystal structure of Hck in complex with a Src family-selective tyrosine kinase inhibitor. , 1999, Molecular cell.

[72]  Michael J. Eck,et al.  Three-dimensional structure of the tyrosine kinase c-Src , 1997, Nature.

[73]  Caleb J Bashor,et al.  The Ste5 Scaffold Allosterically Modulates Signaling Output of the Yeast Mating Pathway , 2006, Science.

[74]  Tom Alber,et al.  A conserved dimer and global conformational changes in the structure of apo-PknE Ser/Thr protein kinase from Mycobacterium tuberculosis. , 2006, Journal of molecular biology.

[75]  P. Pellicena,et al.  Coupling kinase activation to substrate recognition in SRC-family tyrosine kinases. , 2002, Frontiers in bioscience : a journal and virtual library.