Visualizing lipid membrane structure with cryo-EM: past, present, and future.

The development of electron cryomicroscopy (cryo-EM) has evolved immensely in the last several decades and is now well-established in the analysis of protein structure both in isolation and in their cellular context. This review focuses on the history and application of cryo-EM to the analysis of membrane architecture. Parallels between the levels of organization of protein structure are useful in organizing the discussion of the unique parameters that influence membrane structure and function. Importantly, the timescales of lipid motion in bilayers with respect to the timescales of sample vitrification is discussed and reveals what types of membrane structure can be reliably extracted in cryo-EM images of vitrified samples. Appreciating these limitations, a review of the application of cryo-EM to examine the lateral organization of ordered and disordered domains in reconstituted and biologically derived membranes is provided. Finally, a brief outlook for further development and application of cryo-EM to the analysis of membrane architecture is provided.

[1]  M. Waxham,et al.  Optimization of cryo-electron microscopy for quantitative analysis of lipid bilayers , 2022, bioRxiv.

[2]  O. Clarke,et al.  High-resolution single-particle cryo-EM of samples vitrified in boiling nitrogen , 2021, IUCrJ.

[3]  G. Feigenson On the small size of liquid-disordered + liquid-ordered nanodomains. , 2021, Biochimica et biophysica acta. Biomembranes.

[4]  Subhadip Ghosh,et al.  Critical Phenomena in Plasma Membrane Organization and Function. , 2020, Annual review of physical chemistry.

[5]  M. Schick,et al.  Recent Experiments Support a Microemulsion Origin of Plasma Membrane Domains: Dependence of Domain Size on Physical Parameters , 2020, Membranes.

[6]  Frederick A. Heberle,et al.  Lipid Rafts: Controversies Resolved, Mysteries Remain. , 2020, Trends in cell biology.

[7]  K. Levental,et al.  Plasma membranes are asymmetric in lipid unsaturation, packing, and protein shape , 2020, Nature Chemical Biology.

[8]  Frederick A. Heberle,et al.  Direct label-free imaging of nanodomains in biomimetic and biological membranes by cryogenic electron microscopy , 2020, Proceedings of the National Academy of Sciences.

[9]  A. Mileant,et al.  Direct imaging of liquid domains in membranes by cryo-electron tomography , 2020, Proceedings of the National Academy of Sciences.

[10]  M. Waxham,et al.  Morphology of mitochondria in spatially restricted axons revealed by cryo-electron tomography , 2018, bioRxiv.

[11]  Frederick A. Heberle,et al.  1H NMR Shows Slow Phospholipid Flip-Flop in Gel and Fluid Bilayers , 2017, Langmuir : the ACS journal of surfaces and colloids.

[12]  Hongwei Wang,et al.  How cryo‐electron microscopy and X‐ray crystallography complement each other , 2017, Protein science : a publication of the Protein Society.

[13]  Edward H Egelman,et al.  The Current Revolution in Cryo-EM. , 2016, Biophysical journal.

[14]  Frederick A. Heberle,et al.  Structural Significance of Lipid Diversity as Studied by Small Angle Neutron and X-ray Scattering , 2015, Membranes.

[15]  H. Amenitsch,et al.  In Situ Determination of Structure and Fluctuations of Coexisting Fluid Membrane Domains , 2015, Biophysical journal.

[16]  W. Kühlbrandt,et al.  Cryo-EM enters a new era , 2014, eLife.

[17]  T. Wohland,et al.  Temperature dependence of diffusion in model and live cell membranes characterized by imaging fluorescence correlation spectroscopy. , 2014, Biochimica et biophysica acta.

[18]  S. Safran,et al.  Hybrid lipids increase the probability of fluctuating nanodomains in mixed membranes. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[19]  Frederick A. Heberle,et al.  Bilayer thickness mismatch controls domain size in model membranes. , 2013, Journal of the American Chemical Society.

[20]  Frederick A. Heberle,et al.  Model-based approaches for the determination of lipid bilayer structure from small-angle neutron and X-ray scattering data , 2012, European Biophysics Journal.

[21]  Mu-Ping Nieh,et al.  Fluid phase lipid areas and bilayer thicknesses of commonly used phosphatidylcholines as a function of temperature. , 2011, Biochimica et biophysica acta.

[22]  Frederick A. Heberle,et al.  Phase separation in lipid membranes. , 2011, Cold Spring Harbor perspectives in biology.

[23]  Kai Simons,et al.  Revitalizing membrane rafts: new tools and insights , 2010, Nature Reviews Molecular Cell Biology.

[24]  D. Marsh Liquid-ordered phases induced by cholesterol: a compendium of binary phase diagrams. , 2010, Biochimica et biophysica acta.

[25]  Kai Simons,et al.  Lipid Rafts As a Membrane-Organizing Principle , 2010, Science.

[26]  Pawel A Penczek,et al.  Image restoration in cryo-electron microscopy. , 2010, Methods in enzymology.

[27]  John Katsaras,et al.  Areas of monounsaturated diacylphosphatidylcholines. , 2009, Biophysical journal.

[28]  D. Marsh,et al.  Cholesterol-induced fluid membrane domains: a compendium of lipid-raft ternary phase diagrams. , 2009, Biochimica et biophysica acta.

[29]  S. Hell,et al.  Direct observation of the nanoscale dynamics of membrane lipids in a living cell , 2009, Nature.

[30]  G. Feigenson,et al.  Effects of cholesterol and unsaturated DOPC lipid on chain packing of saturated gel-phase DPPC bilayers , 2009 .

[31]  Bernard R Brooks,et al.  Rotation of lipids in membranes: molecular dynamics simulation, 31P spin-lattice relaxation, and rigid-body dynamics. , 2008, Biophysical journal.

[32]  G. Meer,et al.  Membrane lipids: where they are and how they behave , 2008, Nature Reviews Molecular Cell Biology.

[33]  Fred J Sigworth,et al.  Using cryo-EM to measure the dipole potential of a lipid membrane , 2006, Proceedings of the National Academy of Sciences.

[34]  J. Nagle,et al.  Structure of Gel Phase DMPC Determined by X-Ray Diffraction , 2002 .

[35]  S. Dodd,et al.  Area per lipid and acyl length distributions in fluid phosphatidylcholines determined by (2)H NMR spectroscopy. , 2000, Biophysical journal.

[36]  E. Ikonen,et al.  Functional rafts in cell membranes , 1997, Nature.

[37]  R. Suter,et al.  Structure of gel phase saturated lecithin bilayers: temperature and chain length dependence. , 1996, Biophysical journal.

[38]  Y. Fujiyoshi,et al.  A new method to measure bilayer thickness: cryo-electron microscopy of frozen hydrated liposomes and image simulation. , 1994, Micron.

[39]  R M Venable,et al.  Molecular dynamics simulations of a lipid bilayer and of hexadecane: an investigation of membrane fluidity. , 1993, Science.

[40]  James H. Davis,et al.  Phase equilibria of cholesterol/dipalmitoylphosphatidylcholine mixtures: 2H nuclear magnetic resonance and differential scanning calorimetry. , 1990, Biochemistry.

[41]  G. Karlström,et al.  Phase equilibria in the phosphatidylcholine-cholesterol system. , 1987, Biochimica et biophysica acta.

[42]  J. Lepault,et al.  Cryo-electron microscopy of artificial biological membranes , 1985 .

[43]  S. Chan,et al.  Physicochemical characterization of 1,2-diphytanoyl-sn-glycero-3-phosphocholine in model membrane systems. , 1979, Biochimica et biophysica acta.