Mechanistic modelling of in vitro fermentation and methane production by rumen microbiota
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Rafael Muñoz-Tamayo | Daniel Sauvant | Sylvie Giger-Reverdin | R. Muñoz-Tamayo | D. Sauvant | S. Giger-Reverdin
[1] J. France,et al. Estimation of the stoichiometry of volatile fatty acid production in the rumen of lactating cows. , 2006, Journal of theoretical biology.
[2] J. Cant,et al. Non-steady-state modeling of effects of timing and level of concentrate supplementation on ruminal pH and forage intake in high-producing, grazing ewes. , 2005, Journal of animal science.
[3] R. L. Baldwin,et al. Quantitative and dynamic aspects of nitrogen metabolism in the rumen: a modeling analysis. , 1979, Journal of animal science.
[4] D. Sauvant,et al. Effects of the percentage of concentrate on rumen fermentation, nutrient digestibility, plasma metabolites, and milk composition in mid-lactation goats. , 2011, Journal of dairy science.
[5] M. Hanigan,et al. A modified version of the Molly rumen model to quantify methane emissions from sheep. , 2015, Journal of animal science.
[6] L. Raab,et al. The estimation of the digestibility and metabolizable energy content of ruminant feedingstuffs from the gas production when they are incubated with rumen liquor in vitro , 1979, The Journal of Agricultural Science.
[7] J. France,et al. A dynamic mechanistic model of lactic acid metabolism in the rumen. , 2014, Journal of dairy science.
[8] R. Wallace,et al. Incorporation of [15N]Ammonia by the Cellulolytic Ruminal Bacteria Fibrobacter succinogenesBL2, Ruminococcus albus SY3, and Ruminococcus flavefaciens 17 , 2001, Applied and Environmental Microbiology.
[9] L. Lin,et al. A concordance correlation coefficient to evaluate reproducibility. , 1989, Biometrics.
[10] D. Sauvant,et al. Fractionation of pea flour with pilot scale sieving. II. In vitro fermentation of pea seed fractions of different particle sizes , 2009 .
[11] Jérôme Harmand,et al. A model of a syntrophic relationship between two microbial species in a chemostat including maintenance. , 2016, Mathematical biosciences.
[12] J. Paruelo,et al. How to evaluate models : Observed vs. predicted or predicted vs. observed? , 2008 .
[13] A. Offner,et al. Comparative evaluation of the Molly, CNCPS, and LES rumen models , 2004 .
[14] Eugene E. Petersen,et al. Chemical Reaction Analysis , 1965 .
[15] Eric Walter,et al. Kinetic modelling of lactate utilization and butyrate production by key human colonic bacterial species. , 2011, FEMS microbiology ecology.
[16] R. Boston,et al. The role of thermodynamics in controlling rumen metabolism. , 2000 .
[17] A. Offner,et al. Effects of inoculum source, pH, redox potential and headspace di-hydrogen on rumen in vitro fermentation yields. , 2014, Animal : an international journal of animal bioscience.
[18] Eric Walter,et al. Identification of Parametric Models: from Experimental Data , 1997 .
[19] J. A. Robinson,et al. Kinetics of Hydrogen Consumption by Rumen Fluid, Anaerobic Digestor Sludge, and Sediment , 1982, Applied and environmental microbiology.
[20] P. Pullammanappallil,et al. Protein degradation during anaerobic wastewater treatment: derivation of stoichiometry , 2004, Biodegradation.
[21] J. France,et al. A mechanistic model of whole-tract digestion and methanogenesis in the lactating dairy cow: model development, evaluation, and application. , 2001, Journal of animal science.
[22] J Dijkstra,et al. Simulation of the dynamics of protozoz in the rumen , 1994, British Journal of Nutrition.
[23] T. Miller,et al. Microbe-microbe interactions , 1997 .
[24] R. L. Baldwin,et al. Rumen modeling: rumen input-output balance models. , 1975, Journal of dairy science.
[25] J. Doré,et al. Mathematical modelling of carbohydrate degradation by human colonic microbiota. , 2010, Journal of theoretical biology.
[26] R. Dewhurst,et al. Proportions of volatile fatty acids in relation to the chemical composition of feeds based on grass silage. , 1998, Journal of dairy science.
[27] J. Dijkstra,et al. A model of enteric fermentation in dairy cows to estimate methane emission for the Dutch National Inventory Report using the IPCC Tier 3 approach , 2011 .
[28] A. Strathe,et al. Ruminal pH regulation and nutritional consequences of low pH , 2012 .
[29] R. L. Baldwin,et al. Modeling of rumen water kinetics and effects of rumen pH changes. , 1988, Journal of dairy science.
[30] J. Dolfing,et al. Maintenance affects the stability of a two-tiered microbial 'food chain'? , 2011, Journal of theoretical biology.
[31] R. Kleerebezem,et al. Flux analysis of the human proximal colon using anaerobic digestion model 1. , 2014, Anaerobe.
[32] M. Herrero,et al. The influence of diet of the donor animal on the initial bacterial concentration of ruminal fluid and in vitro gas production degradability parameters. , 2000 .
[33] B. Brunt,et al. A mechanistic model of hydrogen-methanogen dynamics in the rumen. , 2016, Journal of theoretical biology.
[34] Irini Angelidaki,et al. Anaerobic digestion model No. 1 (ADM1) , 2002 .
[35] M. Cotta,et al. Metabolism of nitrogen-containing compounds , 1997 .
[36] D. Sauvant,et al. In vivo production and molar percentages of volatile fatty acids in the rumen: a quantitative review by an empirical approach. , 2011, Animal : an international journal of animal bioscience.
[37] R L Baldwin,et al. Metabolism of the lactating cow: II. Digestive elements of a mechanistic model , 1987, Journal of Dairy Research.
[38] M. Murphy,et al. Estimation of stoichiometric parameters for rumen fermentation of roughage and concentrate diets. , 1982, Journal of animal science.
[39] Eric Walter,et al. IDEAS: A Parameter Identification Toolbox with Symbolic Analysis of Uncertainty and Its Application to Biological Modelling , 2009 .
[40] D. Sauvant,et al. In vitro fermentation of total mixed diets differing in concentrate proportion: relative effects of inocula and substrates. , 2016, Journal of the science of food and agriculture.
[41] R. Kohn,et al. Calculation of the buffering capacity of bicarbonate in the rumen and in vitro. , 1998, Journal of animal science.
[42] J. Dijkstra,et al. Aspects of rumen microbiology central to mechanistic modelling of methane production in cattle , 2008, The Journal of Agricultural Science.
[43] P. Janssen. Influence of hydrogen on rumen methane formation and fermentation balances through microbial growth kinetics and fermentation thermodynamics , 2010 .
[44] Ermias Kebreab,et al. Rumen stoichiometric models and their contribution and challenges in predicting enteric methane production , 2011 .
[45] E. L. Cox,et al. Model of cellulose disappearance from the rumen. , 1972, Journal of dairy science.
[46] D. Sauvant,et al. Development of a mechanistic model for rumen digestion validated using the duodenal flux of amino acids. , 1995, Reproduction, nutrition, development.
[47] Jeffrey C. Lagarias,et al. Convergence Properties of the Nelder-Mead Simplex Method in Low Dimensions , 1998, SIAM J. Optim..
[48] A Bach,et al. Nitrogen metabolism in the rumen. , 2005, Journal of dairy science.
[49] R. Pieper,et al. Determination of Henry's constant, the dissociation constant, and the buffer capacity of the bicarbonate system in ruminal fluid. , 2016, Journal of dairy science.
[50] A. Offner,et al. Thermodynamic modeling of ruminal fermentations , 2006 .
[51] C. Martin,et al. Microbial ecosystem and methanogenesis in ruminants. , 2010, Animal : an international journal of animal bioscience.
[52] J M Lema,et al. Variable stoichiometry with thermodynamic control in ADM1. , 2006, Water science and technology : a journal of the International Association on Water Pollution Research.
[53] J. Russell,et al. Energy-yielding and energy-consuming reactions , 1997 .
[54] D. Sauvant,et al. A mechanistic model of pH and gas exchanges in the rumen and its in vitro application , 2011 .
[55] C. Martin,et al. Influence of rumen protozoa on methane emission in ruminants: a meta-analysis approach. , 2014, Animal : an international journal of animal bioscience.
[56] J. France,et al. Simulation of nutrient digestion, absorption and outflow in the rumen: model description. , 1992, The Journal of nutrition.
[57] Z. Tan,et al. Sampling procedure for the measurement of dissolved hydrogen and volatile fatty acids in the rumen of dairy cows. , 2016, Journal of animal science.
[58] J. Russell,et al. An rRNA approach for assessing the role of obligate amino acid-fermenting bacteria in ruminal amino acid deamination , 1996, Applied and environmental microbiology.
[59] Santiago García-Gen,et al. Generalised modelling approach for anaerobic co-digestion of fermentable substrates. , 2013, Bioresource technology.
[60] D Vrecko,et al. Implementing ADM1 for plant-wide benchmark simulations in Matlab/Simulink. , 2006, Water science and technology : a journal of the International Association on Water Pollution Research.
[61] A. Holmberg. On the practical identifiability of microbial growth models incorporating Michaelis-Menten type nonlinearities , 1982 .
[62] P. Bodegom. Microbial Maintenance: A Critical Review on Its Quantification , 2007, Microbial Ecology.
[63] Lawrence F. Shampine,et al. The MATLAB ODE Suite , 1997, SIAM J. Sci. Comput..