13 Functional Genomics to Characterize Opportunistic Pathogens

[1]  I. Almeida,et al.  The impact of proteomics on the understanding of functions and biogenesis of fungal extracellular vesicles. , 2014, Journal of proteomics.

[2]  O. Kniemeyer,et al.  Elucidating the fungal stress response by proteomics. , 2014, Journal of proteomics.

[3]  O. Pechanova,et al.  A two‐dimensional proteome map of the aflatoxigenic fungus Aspergillus flavus , 2013, Proteomics.

[4]  P. Pappas,et al.  Cryptococcal Infections: Changing Epidemiology and Implications for Therapy , 2013, Drugs.

[5]  H. Schirra,et al.  Comparative Genomics of Serial Isolates of Cryptococcus neoformans Reveals Gene Associated With Carbon Utilization and Virulence , 2013, G3: Genes, Genomes, Genetics.

[6]  D. Kontoyiannis,et al.  Loss of CclA, required for histone 3 lysine 4 methylation, decreases growth but increases secondary metabolite production in Aspergillus fumigatus , 2013, PeerJ.

[7]  A. Beauvais,et al.  Investigation of Aspergillus fumigatus biofilm formation by various “omics” approaches , 2013, Front. Microbio..

[8]  Hong Liu,et al.  Genome mining of a prenylated and immunosuppressive polyketide from pathogenic fungi. , 2013, Organic letters.

[9]  David W. Denning,et al.  Hidden Killers: Human Fungal Infections , 2012, Science Translational Medicine.

[10]  Mikael R. Andersen,et al.  Accurate prediction of secondary metabolite gene clusters in filamentous fungi , 2012, Proceedings of the National Academy of Sciences.

[11]  Axel A. Brakhage,et al.  Regulation of fungal secondary metabolism , 2012, Nature Reviews Microbiology.

[12]  C. D. de Koster,et al.  Carbon source-induced reprogramming of the cell wall proteome and secretome modulates the adherence and drug resistance of the fungal pathogen Candida albicans , 2012, Proteomics.

[13]  R. Guthke,et al.  Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression , 2012, BMC Genomics.

[14]  Clay C C Wang,et al.  Overexpression of the Aspergillus nidulans histone 4 acetyltransferase EsaA increases activation of secondary metabolite production , 2012, Molecular microbiology.

[15]  Gary W. Jones,et al.  The Aspergillus fumigatus Protein GliK Protects against Oxidative Stress and Is Essential for Gliotoxin Biosynthesis , 2012, Eukaryotic Cell.

[16]  A. Westermann,et al.  Dual RNA-seq of pathogen and host , 2012, Nature Reviews Microbiology.

[17]  S. Balusu,et al.  Functional Genomic Analysis of Candida glabrata-Macrophage Interaction: Role of Chromatin Remodeling in Virulence , 2012, PLoS pathogens.

[18]  J. Strauss,et al.  The chromatin code of fungal secondary metabolite gene clusters , 2012, Applied Microbiology and Biotechnology.

[19]  Motoyuki Shimizu,et al.  Hydrolase Controls Cellular NAD, Sirtuin, and Secondary Metabolites , 2012, Molecular and Cellular Biology.

[20]  S. Chakraborty,et al.  Quantitative proteomics and metabolomics approaches to demonstrate N-acetyl-D-glucosamine inducible amino acid deprivation response as morphological switch in Candida albicans. , 2012, Fungal genetics and biology : FG & B.

[21]  Olaf Kniemeyer,et al.  Systems Biology of Fungal Infection , 2012, Front. Microbio..

[22]  R. A. Cramer,et al.  Hypoxia and Fungal Pathogenesis: To Air or Not To Air? , 2012, Eukaryotic Cell.

[23]  O. Kniemeyer,et al.  The Arthroderma benhamiae Hydrophobin HypA Mediates Hydrophobicity and Influences Recognition by Human Immune Effector Cells , 2012, Eukaryotic Cell.

[24]  Ernesto S. Nakayasu,et al.  Vesicle and vesicle-free extracellular proteome of Paracoccidioides brasiliensis: comparative analysis with other pathogenic fungi. , 2012, Journal of proteome research.

[25]  Aurélien Mazurie,et al.  Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter , 2012, BMC Genomics.

[26]  Reinhard Guthke,et al.  Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach , 2012, BMC Systems Biology.

[27]  Hubertus Haas,et al.  Iron – A Key Nexus in the Virulence of Aspergillus fumigatus , 2012, Front. Microbio..

[28]  Udo Hahn,et al.  Genome-Wide Scale-Free Network Inference for Candida albicans , 2012, Front. Microbio..

[29]  S. Brunke,et al.  Candida albicans dimorphism as a therapeutic target , 2012, Expert review of anti-infective therapy.

[30]  Patrick Olbermann,et al.  Oligopeptide transport and regulation of extracellular proteolysis are required for growth of Aspergillus fumigatus on complex substrates but not for virulence , 2011, Molecular microbiology.

[31]  O. Kniemeyer,et al.  Secretome analysis of Aspergillus fumigatus reveals Asp-hemolysin as a major secreted protein. , 2011, International journal of medical microbiology : IJMM.

[32]  Hans-Wilhelm Nützmann,et al.  Cytotoxic pheofungins from an engineered fungus impaired in posttranslational protein modification. , 2011, Angewandte Chemie.

[33]  G. Papanicolaou,et al.  Invasive Non-Aspergillus Mold Infections in Transplant Recipients, United States, 2001–2006 , 2011, Emerging infectious diseases.

[34]  Thierry Rabilloud,et al.  Two-dimensional gel electrophoresis in proteomics: a tutorial. , 2011, Journal of proteomics.

[35]  J. Gershenzon,et al.  The MAP kinase MpkA controls cell wall integrity, oxidative stress response, gliotoxin production and iron adaptation in Aspergillus fumigatus , 2011, Molecular microbiology.

[36]  Hans-Wilhelm Nützmann,et al.  Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation , 2011, Proceedings of the National Academy of Sciences.

[37]  H. Saluz,et al.  Phagocytosis of melanized Aspergillus conidia by macrophages exerts cytoprotective effects by sustained PI3K/Akt signalling , 2011, Cellular microbiology.

[38]  C. D. de Koster,et al.  Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile. , 2011, Microbiology.

[39]  A. Brakhage,et al.  A dedicated glutathione S-transferase mediates carbon-sulfur bond formation in gliotoxin biosynthesis. , 2011, Journal of the American Chemical Society.

[40]  Kriston L. McGary,et al.  Global Transcriptome Changes Underlying Colony Growth in the Opportunistic Human Pathogen Aspergillus fumigatus , 2011, Eukaryotic Cell.

[41]  Olaf Kniemeyer,et al.  Identification of virulence determinants of the human pathogenic fungi Aspergillus fumigatus and Candida albicans by proteomics. , 2011, International journal of medical microbiology : IJMM.

[42]  G. Challis,et al.  The role of glutathione S-transferase GliG in gliotoxin biosynthesis in Aspergillus fumigatus. , 2011, Chemistry & biology.

[43]  E. Werner,et al.  Analysis of the Aspergillus fumigatus Proteome Reveals Metabolic Changes and the Activation of the Pseurotin A Biosynthesis Gene Cluster in Response to Hypoxia , 2011, Journal of proteome research.

[44]  Martin Kollmar,et al.  A novel hybrid gene prediction method employing protein multiple sequence alignments , 2011, Bioinform..

[45]  C. Nombela,et al.  Quantitative proteome and acidic subproteome profiling of Candida albicans yeast-to-hypha transition. , 2011, Journal of proteome research.

[46]  D. Haft,et al.  SMURF: Genomic mapping of fungal secondary metabolite clusters. , 2010, Fungal genetics and biology : FG & B.

[47]  O. Kniemeyer,et al.  Functional genomic profiling of Aspergillus fumigatus biofilm reveals enhanced production of the mycotoxin gliotoxin , 2010, Proteomics.

[48]  J. Palmer,et al.  Secondary metabolism in fungi: does chromosomal location matter? , 2010, Current opinion in microbiology.

[49]  C. D. de Koster,et al.  Mass spectrometric analysis of the secretome of Candida albicans , 2010, Yeast.

[50]  B. Hube,et al.  Interaction of pathogenic yeasts with phagocytes: survival, persistence and escape. , 2010, Current opinion in microbiology.

[51]  Patrick Olbermann,et al.  Validation of a Self-Excising Marker in the Human Pathogen Aspergillus fumigatus by Employing the β-Rec/six Site-Specific Recombination System , 2010, Applied and Environmental Microbiology.

[52]  M. Quadroni,et al.  Aspergillus protein degradation pathways with different secreted protease sets at neutral and acidic pH. , 2010, Journal of proteome research.

[53]  A. Brakhage,et al.  Transannular disulfide formation in gliotoxin biosynthesis and its role in self-resistance of the human pathogen Aspergillus fumigatus. , 2010, Journal of the American Chemical Society.

[54]  R. Cichewicz Epigenome manipulation as a pathway to new natural product scaffolds and their congeners. , 2010, Natural product reports.

[55]  Reinhard Guthke,et al.  Proteome profiling and functional classification of intracellular proteins from conidia of the human-pathogenic mold Aspergillus fumigatus. , 2010, Journal of proteome research.

[56]  Gary W. Jones,et al.  Self-Protection against Gliotoxin—A Component of the Gliotoxin Biosynthetic Cluster, GliT, Completely Protects Aspergillus fumigatus Against Exogenous Gliotoxin , 2010, PLoS pathogens.

[57]  Victoria Chen,et al.  Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity , 2010, Nature Genetics.

[58]  C. Nombela,et al.  Identification of Candida albicans exposed surface proteins in vivo by a rapid proteomic approach. , 2010, Journal of proteomics.

[59]  Bard Ermentrout,et al.  Translational Systems Approaches to the Biology of Inflammation and Healing , 2010, Immunopharmacology and immunotoxicology.

[60]  C. Scazzocchio,et al.  Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans , 2010, Molecular microbiology.

[61]  Reinhard Guthke,et al.  Integrative analysis of the heat shock response in Aspergillus fumigatus , 2010, BMC Genomics.

[62]  Alexander D. Johnson,et al.  A Phenotypic Profile of the Candida albicans Regulatory Network , 2009, PLoS genetics.

[63]  A. Brakhage,et al.  The MpkA MAP kinase module regulates cell wall integrity signaling and pyomelanin formation in Aspergillus fumigatus. , 2009, Fungal genetics and biology : FG & B.

[64]  Clay C C Wang,et al.  Unlocking Fungal Cryptic Natural Products , 2009, Natural product communications.

[65]  J. Quinn,et al.  A proteomic analysis of the salt, cadmium and peroxide stress responses in Candida albicans and the role of the Hog1 stress‐activated MAPK in regulating the stress‐induced proteome , 2009, Proteomics.

[66]  D. Andes,et al.  HdaA, a class 2 histone deacetylase of Aspergillus fumigatus, affects germination and secondary metabolite production. , 2009, Fungal genetics and biology : FG & B.

[67]  A. Brakhage,et al.  Aspects on evolution of fungal beta-lactam biosynthesis gene clusters and recruitment of trans-acting factors. , 2009, Phytochemistry.

[68]  Marcus C. Chibucos,et al.  The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community , 2009, Nucleic Acids Res..

[69]  John R Yates,et al.  Proteomics by mass spectrometry: approaches, advances, and applications. , 2009, Annual review of biomedical engineering.

[70]  Y. Reyes-Domínguez,et al.  Chromatin-level regulation of biosynthetic gene clusters. , 2009, Nature chemical biology.

[71]  E. Pérez-Nadales,et al.  Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi. , 2009, Fungal genetics and biology : FG & B.

[72]  Michael Hecker,et al.  Gene regulatory network inference: Data integration in dynamic models - A review , 2009, Biosyst..

[73]  P. Green,et al.  Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. , 2009, Genome research.

[74]  R. Guthke,et al.  Two‐dimensional proteome reference maps for the human pathogenic filamentous fungus Aspergillus fumigatus , 2009, Proteomics.

[75]  Nancy F. Hansen,et al.  Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.

[76]  L. Samaranayake,et al.  Biofilm lifestyle of Candida: a mini review. , 2008, Oral diseases.

[77]  E. Calvo,et al.  A study of the Candida albicans cell wall proteome , 2008, Proteomics.

[78]  W. Nierman,et al.  Sub-Telomere Directed Gene Expression during Initiation of Invasive Aspergillosis , 2008, PLoS pathogens.

[79]  Hubertus Haas,et al.  SreA-mediated iron regulation in Aspergillus fumigatus , 2008, Molecular microbiology.

[80]  D. Askew Aspergillus fumigatus: virulence genes in a street-smart mold. , 2008, Current opinion in microbiology.

[81]  A. Casadevall,et al.  Vesicular transport in Histoplasma capsulatum: an effective mechanism for trans‐cell wall transfer of proteins and lipids in ascomycetes , 2008, Cellular microbiology.

[82]  David C. Muddiman,et al.  Top-down identification and quantification of stable isotope labeled proteins from Aspergillus flavus using online nano-flow reversed-phase liquid chromatography coupled to a LTQ-FTICR mass spectrometer. , 2008, Analytical chemistry.

[83]  G. Payne,et al.  Temperature-dependent regulation of proteins in Aspergillus flavus: whole organism stable isotope labeling by amino acids. , 2008, Journal of proteome research.

[84]  A. Brakhage,et al.  The mitogen-activated protein kinase MpkA of Aspergillus fumigatus regulates cell wall signaling and oxidative stress response. , 2008, Fungal genetics and biology : FG & B.

[85]  Harald Kusch,et al.  A proteomic view of Candida albicans yeast cell metabolism in exponential and stationary growth phases. , 2008, International journal of medical microbiology : IJMM.

[86]  K. Hellingwerf,et al.  Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions. , 2008, Microbiology.

[87]  Gustavo H. Goldman,et al.  The aspergilli: genomics, medical aspects, biotechnology, and research methods. , 2007 .

[88]  A. Casadevall,et al.  Extracellular Vesicles Produced by Cryptococcus neoformans Contain Protein Components Associated with Virulence , 2007, Eukaryotic Cell.

[89]  Olaf Kniemeyer,et al.  The Aspergillus fumigatus Transcriptional Regulator AfYap1 Represents the Major Regulator for Defense against Reactive Oxygen Intermediates but Is Dispensable for Pathogenicity in an Intranasal Mouse Infection Model , 2007, Eukaryotic Cell.

[90]  N. Patron,et al.  Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes , 2007, BMC Evolutionary Biology.

[91]  Masashi Kato,et al.  Interaction of HapX with the CCAAT‐binding complex—a novel mechanism of gene regulation by iron , 2007, The EMBO journal.

[92]  M. Tribus,et al.  Histone Deacetylase Activity Regulates Chemical Diversity in Aspergillus , 2007, Eukaryotic Cell.

[93]  Corinna Lange,et al.  Genomics-driven discovery of PKS-NRPS hybrid metabolites from Aspergillus nidulans. , 2007, Nature chemical biology.

[94]  C. P. Semighini,et al.  Functional characterization of the Aspergillus fumigatus calcineurin. , 2007, Fungal genetics and biology : FG & B.

[95]  S. Engelmann,et al.  Proteomic analysis of the oxidative stress response in Candida albicans , 2007, Proteomics.

[96]  M. Pfaller,et al.  Epidemiology of Invasive Candidiasis: a Persistent Public Health Problem , 2007, Clinical Microbiology Reviews.

[97]  J. Lopez-Ribot,et al.  Proteomics for the analysis of the Candida albicans biofilm lifestyle , 2006, Proteomics.

[98]  M. Ünlü,et al.  Two-dimensional difference gel electrophoresis , 2006, Nature Protocols.

[99]  Elisabetta Gianazza,et al.  Protein stains for proteomic applications: Which, when, why? , 2006, Proteomics.

[100]  Christopher M. Crew,et al.  A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors , 2006, Proceedings of the National Academy of Sciences.

[101]  William R. Kirkpatrick,et al.  Calcineurin Controls Growth, Morphology, and Pathogenicity in Aspergillus fumigatus , 2006, Eukaryotic Cell.

[102]  W. Nierman,et al.  Transcriptome analysis of Aspergillus fumigatus exposed to voriconazole , 2006, Current Genetics.

[103]  R. Aebersold,et al.  Mass Spectrometry and Protein Analysis , 2006, Science.

[104]  U. Reichard,et al.  Proteome of conidial surface associated proteins of Aspergillus fumigatus reflecting potential vaccine candidates and allergens. , 2006, Journal of proteome research.

[105]  J. Lodge,et al.  Posttranslational, Translational, and Transcriptional Responses to Nitric Oxide Stress in Cryptococcus neoformans: Implications for Virulence , 2006, Eukaryotic Cell.

[106]  Olaf Kniemeyer,et al.  Optimisation of a 2-D gel electrophoresis protocol for the human-pathogenic fungus Aspergillus fumigatus , 2006, Current Genetics.

[107]  G. Braus,et al.  Gene Targeting in Aspergillus fumigatus by Homologous Recombination Is Facilitated in a Nonhomologous End- Joining-Deficient Genetic Background , 2006, Eukaryotic Cell.

[108]  William H. Majoros,et al.  Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus , 2005, Nature.

[109]  Christina A. Cuomo,et al.  Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae , 2005, Nature.

[110]  Axel A Brakhage,et al.  Systemic fungal infections caused by Aspergillus species: epidemiology, infection process and virulence determinants. , 2005, Current drug targets.

[111]  J. Heesemann,et al.  Analysis of the major proteins secreted by the human opportunistic pathogen Aspergillus fumigatus under in vitro conditions. , 2005, Medical mycology.

[112]  M. Mann,et al.  Mass spectrometry–based proteomics turns quantitative , 2005, Nature chemical biology.

[113]  C. Lan,et al.  Genome-Wide Transcription Profiling of the Early Phase of Biofilm Formation by Candida albicans , 2005, Eukaryotic Cell.

[114]  S. Bergmann,et al.  Comparative Gene Expression Analysis by a Differential Clustering Approach: Application to the Candida albicans Transcription Program , 2005, PLoS genetics.

[115]  M. Mann,et al.  Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein*S , 2005, Molecular & Cellular Proteomics.

[116]  D. Gardiner,et al.  Bioinformatic and expression analysis of the putative gliotoxin biosynthetic gene cluster of Aspergillus fumigatus. , 2005, FEMS microbiology letters.

[117]  Gert Lubec,et al.  Limitations of current proteomics technologies. , 2005, Journal of chromatography. A.

[118]  R. Homayouni,et al.  Genome-Wide Expression Profiling of the Response to Azole, Polyene, Echinocandin, and Pyrimidine Antifungal Agents in Candida albicans , 2005, Antimicrobial Agents and Chemotherapy.

[119]  C. D. de Koster,et al.  Systematic identification in silico of covalently bound cell wall proteins and analysis of protein-polysaccharide linkages of the human pathogen Candida glabrata. , 2004, Microbiology.

[120]  P. R. Kraus,et al.  Identification of Cryptococcus neoformans Temperature-Regulated Genes with a Genomic-DNA Microarray , 2004, Eukaryotic Cell.

[121]  M. Mann,et al.  The abc's (and xyz's) of peptide sequencing , 2004, Nature Reviews Molecular Cell Biology.

[122]  M. Bard,et al.  Genome-wide expression profiling reveals genes associated with amphotericin B and fluconazole resistance in experimentally induced antifungal resistant isolates of Candida albicans. , 2004, The Journal of antimicrobial chemotherapy.

[123]  J. Lodge,et al.  Mechanisms of Resistance to Oxidative and Nitrosative Stress: Implications for Fungal Survival in Mammalian Hosts , 2004, Eukaryotic Cell.

[124]  K. Hellingwerf,et al.  Proteomic Analysis of Candida albicans Cell Walls Reveals Covalently Bound Carbohydrate-Active Enzymes and Adhesins , 2004, Eukaryotic Cell.

[125]  Alistair J. P. Brown,et al.  APSES proteins regulate morphogenesis and metabolism in Candida albicans. , 2004, Molecular biology of the cell.

[126]  J. Bok,et al.  LaeA, a Regulator of Secondary Metabolism in Aspergillus spp , 2004, Eukaryotic Cell.

[127]  C. Nombela,et al.  Two‐dimensional reference map of Candida albicans hyphal forms , 2004, Proteomics.

[128]  Sheng-He Huang,et al.  Binding of Candida albicans enolase to plasmin(ogen) results in enhanced invasion of human brain microvascular endothelial cells. , 2003, Journal of medical microbiology.

[129]  B. Jahn,et al.  cAMP signaling in Aspergillus fumigatus is involved in the regulation of the virulence gene pksP and in defense against killing by macrophages , 2003, Molecular Genetics and Genomics.

[130]  D. Botstein,et al.  Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[131]  K. Langfelder,et al.  Biosynthesis of fungal melanins and their importance for human pathogenic fungi. , 2003, Fungal genetics and biology : FG & B.

[132]  John R Yates,et al.  Multidimensional separations for protein/peptide analysis in the post-genomic era. , 2002, BioTechniques.

[133]  J. Latgé,et al.  Differential Expression of the Aspergillus fumigatus pksP Gene Detected In Vitro and In Vivo with Green Fluorescent Protein , 2001, Infection and Immunity.

[134]  Xiao-Jun Ma,et al.  Genomic Profiling of the Response of Candida albicans to Itraconazole Treatment Using a DNA Microarray , 2001, Antimicrobial Agents and Chemotherapy.

[135]  H. Arst,et al.  Signature‐tagged and directed mutagenesis identify PABA synthetase as essential for Aspergillus fumigatus pathogenicity , 2000, Molecular microbiology.

[136]  K. Langfelder,et al.  Interaction of Human Phagocytes with PigmentlessAspergillus Conidia , 2000, Infection and Immunity.

[137]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[138]  Ronald W. Davis,et al.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. , 1999, Science.

[139]  S. Falkow,et al.  An adhesin of the yeast pathogen Candida glabrata mediating adherence to human epithelial cells. , 1999, Science.

[140]  K. Langfelder,et al.  Identification of a polyketide synthase gene (pksP) of Aspergillus fumigatus involved in conidial pigment biosynthesis and virulence , 1998, Medical Microbiology and Immunology.

[141]  Ronald W. Davis,et al.  Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.

[142]  J. Craig Venter,et al.  Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library , 1993, Nature Genetics.

[143]  A. Pardee,et al.  Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. , 1992, Science.

[144]  D. Kemp,et al.  Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[145]  C. D. de Koster,et al.  Beyond the wall: Candida albicans secret(e)s to survive. , 2013, FEMS microbiology letters.

[146]  Henning Urlaub,et al.  Quantitative Mass Spectrometry-Based Proteomics: An Overview , 2012, Quantitative Methods in Proteomics.

[147]  J. Yates,et al.  Proteomic profiling of the influence of iron availability on Cryptococcus gattii. , 2012, Journal of proteome research.

[148]  Axel A. Brakhage,et al.  Biosynthesis and function of gliotoxin in Aspergillus fumigatus , 2011, Applied Microbiology and Biotechnology.

[149]  K. Hellingwerf,et al.  Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH. , 2011, Microbiology.

[150]  M. Gerstein,et al.  RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.

[151]  A. Brakhage,et al.  Activation of fungal silent gene clusters: a new avenue to drug discovery. , 2008, Progress in drug research. Fortschritte der Arzneimittelforschung. Progres des recherches pharmaceutiques.

[152]  W. Nierman,et al.  A comparative view of the genome of Aspergillus fumigatus. , 2007 .

[153]  M. L. Nielsen,et al.  Efficient PCR-based gene targeting with a recyclable marker for Aspergillus nidulans. , 2006, Fungal genetics and biology : FG & B.

[154]  H. Mewes,et al.  The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. , 2004, Nucleic acids research.

[155]  Norman W. Paton,et al.  CADRE: the Central Aspergillus Data REpository. , 2004 .

[156]  A. Brazma,et al.  Global transcriptional responses of fission yeast to environmental stress. , 2003, Molecular biology of the cell.

[157]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[158]  M. Ünlü,et al.  Difference gel electrophoresis. A single gel method for detecting changes in protein extracts , 1997, Electrophoresis.

[159]  D. Hochstrasser,et al.  Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it. , 1996, Biotechnology & genetic engineering reviews.

[160]  K. Mullis,et al.  Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. , 1986, Cold Spring Harbor symposia on quantitative biology.