Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application.

We agree with Shafer et al. [1] that there is a need for well-documented case studies of the application of genomics in conservation and management as well as increased communication between academics and natural resource managers. However, we challenge Shafer et al.’s [1] relatively pessimistic assertion that ‘conservation genomics is far from seeing regular application’. Here we illustrate by examples that conservation practitioners utilize more genomic research than is often apparent. In addition, we highlight the work of nonacademic laboratories [government and nongovernmental organizations (NGOs)], some of which are not always well represented in peer-reviewed literature.

[1]  Tom H. Pringle,et al.  Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) , 2011, Proceedings of the National Academy of Sciences.

[2]  S. Prober,et al.  Genome-wide scans reveal cryptic population structure in a dry-adapted eucalypt , 2015, Tree Genetics & Genomes.

[3]  E. Anderson,et al.  A validation of parentage-based tagging using hatchery steelhead in the Snake River basin , 2013 .

[4]  S. Narum,et al.  Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing , 2015, Molecular ecology resources.

[5]  N. J. Ouborg,et al.  Genomics and the challenging translation into conservation practice. , 2015, Trends in ecology & evolution.

[6]  A. Lemmon,et al.  Anchored hybrid enrichment for massively high-throughput phylogenomics. , 2012, Systematic biology.

[7]  S. Narum,et al.  Use of genotyping by sequencing data to develop a high‐throughput and multifunctional SNP panel for conservation applications in Pacific lamprey , 2015, Molecular ecology resources.

[8]  S. Narum,et al.  Genotyping‐by‐sequencing in ecological and conservation genomics , 2013, Molecular ecology.

[9]  R. Waples,et al.  Pacific Salmon Extinctions: Quantifying Lost and Remaining Diversity , 2007, Conservation biology : the journal of the Society for Conservation Biology.

[10]  G. Luikart,et al.  Genomics and the future of conservation genetics , 2010, Nature Reviews Genetics.