Follicular Lymphoma Microenvironment Characteristics Associated with Tumor Cell Mutations and MHC Class II Expression
暂无分享,去创建一个
C. Flowers | Guangchun Han | Linghua Wang | S. Parmar | K. Nomie | L. Fayad | J. Westin | S. Neelapu | Xubin Li | Saira S Ahmed | E. Dai | H. Lee | F. Hagemeister | N. Kotlov | F. Samaniego | L. Nastoupil | N. Fowler | Mario L. Marques-Piubelli | P. Strati | R. Steiner | E. Parra | F. Vega | M. Dang | A. Bagaev | O. Kudryashova | M. Meerson | Sergey Isaev | L. S. Solis Soto | M. Green | S. Iyer | Haopeng Yang | M. Ma | Francisco Vega | Jared Henderson | Qing Deng | Saira S. Ahmed | J. Henderson | Q. Deng | Mark Meerson
[1] N. Almog,et al. Conserved pan-cancer microenvironment subtypes predict response to immunotherapy. , 2021, Cancer cell.
[2] I. Wistuba,et al. Multiplex Immunofluorescence Tyramide Signal Amplification for Immune Cell Profiling of Paraffin-Embedded Tumor Tissues , 2021, Frontiers in Molecular Biosciences.
[3] Hanlee P. Ji,et al. Single Cell Analysis Can Define Distinct Evolution of Tumor Sites in Follicular Lymphoma. , 2021, Blood.
[4] J. Leonard,et al. Clinical and biological subtypes of B-cell lymphoma revealed by microenvironmental signatures. , 2021, Cancer discovery.
[5] Ryan D. Chow,et al. CRISPR-GEMM pooled mutagenic screening identifies KMT2D as a major modulator of immune checkpoint blockade. , 2020, Cancer discovery.
[6] M. Lanuti,et al. Abstract 853: Novel machine learning based deconvolution algorithm results in accurate description of tumor microenvironment from bulk RNAseq , 2020 .
[7] S. Fröhling,et al. Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels , 2020, Nature Cell Biology.
[8] Chun Jimmie Ye,et al. Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer , 2020, Cell.
[9] Michael R. Green,et al. The serine hydroxymethyltransferase-2 (SHMT2) initiates lymphoma development through epigenetic tumor suppressor silencing , 2020, Nature Cancer.
[10] Mei Jiang,et al. Procedural Requirements and Recommendations for Multiplex Immunofluorescence Tyramide Signal Amplification Assays to Support Translational Oncology Studies , 2020, Cancers.
[11] W. Klapper,et al. Progression of Disease Within 24 Months in Follicular Lymphoma Is Associated With Reduced Intratumoral Immune Infiltration , 2019, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[12] Mariella G. Filbin,et al. An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma , 2019, Cell.
[13] Michael R. Green,et al. Subtype-specific and co-occurring genetic alterations in B-cell non-Hodgkin lymphoma , 2019, bioRxiv.
[14] Fabian J Theis,et al. Current best practices in single‐cell RNA‐seq analysis: a tutorial , 2019, Molecular systems biology.
[15] Ash A. Alizadeh,et al. Determining cell-type abundance and expression from bulk tissues with digital cytometry , 2019, Nature Biotechnology.
[16] Noemi Andor,et al. Single-cell RNA-Seq of follicular lymphoma reveals malignant B-cell types and coexpression of T-cell immune checkpoints. , 2019, Blood.
[17] A. López-Guillermo,et al. Life expectancy of follicular lymphoma patients in complete response at 30 months is similar to that of the Spanish general population , 2019, British journal of haematology.
[18] Ryan D. Morin,et al. Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition. , 2019, Cancer discovery.
[19] Michael R. Green,et al. Selective inhibition of HDAC3 targets synthetic vulnerabilities and activates immune surveillance in lymphoma , 2019, bioRxiv.
[20] E. Giné,et al. Response duration and survival shorten after each relapse in patients with follicular lymphoma treated in the rituximab era , 2018, British journal of haematology.
[21] Vincent A. Traag,et al. From Louvain to Leiden: guaranteeing well-connected communities , 2018, Scientific Reports.
[22] J. Leonard,et al. Novel immunotherapy approaches to follicular lymphoma. , 2018, Hematology. American Society of Hematology. Education Program.
[23] Fan Zhang,et al. Fast, sensitive, and accurate integration of single cell data with Harmony , 2018, bioRxiv.
[24] Christoph Hafemeister,et al. Comprehensive integration of single cell data , 2018, bioRxiv.
[25] Monika S. Kowalczyk,et al. A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade , 2018, Cell.
[26] Paul J. Hoover,et al. Defining T Cell States Associated with Response to Checkpoint Immunotherapy in Melanoma , 2018, Cell.
[27] B. Nadel,et al. Human germinal center transcriptional programs are de-synchronized in B cell lymphoma , 2018, Nature Immunology.
[28] Paul Hoffman,et al. Integrating single-cell transcriptomic data across different conditions, technologies, and species , 2018, Nature Biotechnology.
[29] Leland McInnes,et al. UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction , 2018, ArXiv.
[30] Michael R. Green,et al. Chromatin modifying gene mutations in follicular lymphoma. , 2018, Blood.
[31] K. Savage,et al. Major Histocompatibility Complex Class II and Programmed Death Ligand 1 Expression Predict Outcome After Programmed Death 1 Blockade in Classic Hodgkin Lymphoma. , 2018, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[32] Robert Kridel,et al. Pathogenesis of follicular lymphoma. , 2017, Best practice & research. Clinical haematology.
[33] Salles,et al. A gene-expression profiling score for prediction of outcome in patients with follicular lymphoma: a retrospective training and validation analysis in three international cohorts , 2018 .
[34] Fabian J Theis,et al. SCANPY: large-scale single-cell gene expression data analysis , 2018, Genome Biology.
[35] G. Lenz,et al. Phosphatidylinositol 3-Kinase Inhibition by Copanlisib in Relapsed or Refractory Indolent Lymphoma. , 2017, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[36] Ryan Emerson,et al. TCR Repertoire Intratumor Heterogeneity in Localized Lung Adenocarcinomas: An Association with Predicted Neoantigen Heterogeneity and Postsurgical Recurrence. , 2017, Cancer discovery.
[37] M. Manz,et al. Inactivation of CREBBP expands the germinal center B cell compartment, down-regulates MHCII expression and promotes DLBCL growth , 2017, Proceedings of the National Academy of Sciences.
[38] Boxi Kang,et al. Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing , 2017, Cell.
[39] D. Speiser,et al. Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data , 2017, bioRxiv.
[40] Ash A. Alizadeh,et al. Antigen Presentation Profiling Reveals Recognition of Lymphoma Immunoglobulin Neoantigens , 2017, Nature.
[41] S. Kent,et al. Cytotoxic CD4 T Cells—Friend or Foe during Viral Infection? , 2017, Front. Immunol..
[42] O. Elemento,et al. CREBBP Inactivation Promotes the Development of HDAC3-Dependent Lymphomas. , 2017, Cancer discovery.
[43] Ali Bashashati,et al. Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study , 2016, PLoS medicine.
[44] Lior Pachter,et al. Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.
[45] James Y. Zou. Analysis of protein-coding genetic variation in 60,706 humans , 2015, Nature.
[46] Robert Kridel,et al. Integration of gene mutations in risk prognostication for patients receiving first-line immunochemotherapy for follicular lymphoma: a retrospective analysis of a prospective clinical trial and validation in a population-based registry. , 2015, The Lancet. Oncology.
[47] E. Komech,et al. tcR: an R package for T cell receptor repertoire advanced data analysis , 2015, BMC Bioinformatics.
[48] Ash A. Alizadeh,et al. Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation , 2015, Proceedings of the National Academy of Sciences.
[49] Steven H. Kleinstein,et al. B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes , 2014, Science Translational Medicine.
[50] Ash A. Alizadeh,et al. Common progenitor cells in mature B-cell malignancies: implications for therapy , 2014, Current opinion in hematology.
[51] Chris Sander,et al. Frequent disruption of the RB pathway in indolent follicular lymphoma suggests a new combination therapy , 2014, The Journal of experimental medicine.
[52] Motohiko Tanino,et al. Duodenal follicular lymphoma: Comprehensive gene expression analysis with insights into pathogenesis , 2014, Cancer science.
[53] W. Chan,et al. EZH2 Mutations in Follicular Lymphoma from Different Ethnic Groups and Associated Gene Expression Alterations , 2014, Clinical Cancer Research.
[54] A. Rosenwald,et al. Whole-genome integrative analysis reveals expression signatures predicting transformation in follicular lymphoma. , 2014, Blood.
[55] Michael R. Green,et al. Depleting tumor-specific Tregs at a single site eradicates disseminated tumors. , 2013, The Journal of clinical investigation.
[56] Ning Ma,et al. IgBLAST: an immunoglobulin variable domain sequence analysis tool , 2013, Nucleic Acids Res..
[57] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[58] J. Allison,et al. Systemic 4-1BB activation induces a novel T cell phenotype driven by high expression of Eomesodermin , 2012, The Journal of experimental medicine.
[59] Justin Guinney,et al. GSVA: gene set variation analysis for microarray and RNA-Seq data , 2013, BMC Bioinformatics.
[60] R. Spang,et al. Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing , 2012, Nature Genetics.
[61] J. Wolchok,et al. Induction of tumoricidal function in CD4+ T cells is associated with concomitant memory and terminally differentiated phenotype , 2012, The Journal of experimental medicine.
[62] Christopher A. Miller,et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. , 2012, Genome research.
[63] Govind Bhagat,et al. Combined genetic inactivation of β2-Microglobulin and CD58 reveals frequent escape from immune recognition in diffuse large B cell lymphoma. , 2011, Cancer cell.
[64] J. Martinez-Climent,et al. PIM2 inhibition as a rational therapeutic approach in B-cell lymphoma. , 2011, Blood.
[65] Steven J. M. Jones,et al. MHC class II transactivator CIITA is a recurrent gene fusion partner in lymphoid cancers , 2011, Nature.
[66] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[67] L. Staudt,et al. Follicular lymphomas with and without translocation t(14;18) differ in gene expression profiles and genetic alterations. , 2007, Blood.
[68] Emily H Turner,et al. Targeted Capture and Massively Parallel Sequencing of Twelve Human Exomes , 2009, Nature.
[69] L. Staudt,et al. Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells. , 2004, The New England journal of medicine.
[70] J. Teruya-Feldstein,et al. Application of tissue microarray technology to the study of non-Hodgkin's and Hodgkin's lymphoma. , 2002, Human pathology.