Histone Deimination Antagonizes Arginine Methylation

Methylation of arginine residues within histone H3 has been linked to active transcription. This modification appears on the estrogen-regulated pS2 promoter when the CARM1 methyltransferase is recruited during transcriptional activation. Here we describe a process, deimination, that converts histone arginine to citrulline and antagonizes arginine methylation. We show that peptidyl arginine deiminase 4 (PADI4) specifically deiminates, arginine residues R2, R8, R17, and R26 in the H3 tail. Deimination by PADI4 prevents arginine methylation by CARM1. Dimethylation of arginines prevents deimination by PADI4 although monomethylation still allows deimination to take place. In vivo targeting experiments on an endogenous promoter demonstrate that PADI4 can repress hormone receptor-mediated gene induction. Consistent with a repressive role for PADI4, this enzyme is recruited to the pS2 promoter following hormone induction when the gene is transcriptionally downregulated. The recruitment of PADI4 coincides with deimination of the histone H3 N-terminal tail. These results define deimination as a novel mechanism for antagonizing the transcriptional induction mediated by arginine methylation.

[1]  T. Senshu,et al.  Detection of citrulline residues in deiminated proteins on polyvinylidene difluoride membrane. , 1992, Analytical biochemistry.

[2]  Michael A. Freitas,et al.  Identification of novel histone post-translational modifications by peptide mass fingerprinting , 2003, Chromosoma.

[3]  C. Allis,et al.  A simplified formaldehyde fixation and immunoprecipitation technique for studying protein-DNA interactions. , 1991, Analytical biochemistry.

[4]  Heike Brand,et al.  Estrogen Receptor-α Directs Ordered, Cyclical, and Combinatorial Recruitment of Cofactors on a Natural Target Promoter , 2003, Cell.

[5]  Tony Kouzarides,et al.  Crosstalk between CARM1 Methylation and CBP Acetylation on Histone H3 , 2002, Current Biology.

[6]  E. Vossenaar,et al.  PAD, a growing family of citrullinating enzymes: genes, features and involvement in disease , 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.

[7]  R. Paro,et al.  Analysis of chromatin structure by in vivo formaldehyde cross-linking. , 1997, Methods.

[8]  C. Allis,et al.  Methylation of Histone H4 at Arginine 3 Facilitating Transcriptional Activation by Nuclear Hormone Receptor , 2001, Science.

[9]  T. Kodadek Faculty Opinions recommendation of Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. , 2004 .

[10]  S. Khorasanizadeh The Nucleosome From Genomic Organization to Genomic Regulation , 2004, Cell.

[11]  S. Carr,et al.  Examination of micro-tip reversed-phase liquid chromatographic extraction of peptide pools for mass spectrometric analysis. , 1998, Journal of chromatography. A.

[12]  M. Yamada,et al.  Nuclear Localization of Peptidylarginine Deiminase V and Histone Deimination in Granulocytes* , 2002, The Journal of Biological Chemistry.

[13]  C. Pabo,et al.  Gene-Specific Targeting of H3K9 Methylation Is Sufficient for Initiating Repression In Vivo , 2002, Current Biology.

[14]  T. Kouzarides,et al.  Methylation at arginine 17 of histone H3 is linked to gene activation , 2002, EMBO reports.

[15]  J. Martens,et al.  Cascade of Distinct Histone Modifications during Collagenase Gene Activation , 2003, Molecular and Cellular Biology.

[16]  H. Erdjument-Bromage,et al.  Improvements in Microsequencer Performance for Low Picomole Sequence Analysis , 1994 .

[17]  Andrew J. Bannister,et al.  Histone Methylation Dynamic or Static? , 2002, Cell.

[18]  H. Hirano,et al.  Deimination of arginine residues in nucleophosmin/B23 and histones in HL-60 granulocytes. , 2002, Biochemical and biophysical research communications.

[19]  Brian D. Strahl,et al.  Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1 , 2001, Current Biology.

[20]  D. Aswad,et al.  Methylation of histone H3 by coactivator-associated arginine methyltransferase 1. , 2001, Biochemistry.

[21]  E. Nicolas,et al.  Balance between Acetylation and Methylation of Histone H3 Lysine 9 on the E2F-Responsive Dihydrofolate Reductase Promoter , 2003, Molecular and Cellular Biology.

[22]  C. Allis,et al.  Hormone-dependent, CARM1-directed, arginine-specific methylation of histone H3 on a steroid-regulated promoter , 2001, Current Biology.