A Rab11- and Microtubule-Dependent Mechanism for Cytoplasmic Transport of Influenza A Virus Viral RNA

ABSTRACT The viral RNA (vRNA) genome of influenza A virus is replicated in the nucleus, exported to the cytoplasm as ribonucleoproteins (RNPs), and trafficked to the plasma membrane through uncertain means. Using fluorescent in situ hybridization to detect vRNA as well as the live cell imaging of fluorescently labeled RNPs, we show that an early event in vRNA cytoplasmic trafficking involves accumulation near the microtubule organizing center in multiple cell types and viral strains. Here, RNPs colocalized with Rab11, a pericentriolar recycling endosome marker. Cytoplasmic RNP localization was perturbed by inhibitors of vesicular trafficking, microtubules, or the short interfering RNA-mediated depletion of Rab11. Green fluorescent protein (GFP)-tagged RNPs in living cells demonstrated rapid, bidirectional, and saltatory movement, which is characteristic of microtubule-based transport, and also cotrafficked with fluorescent Rab11. Coprecipitation experiments showed an interaction between RNPs and the GTP-bound form of Rab11, potentially mediated via the PB2 subunit of the polymerase. We propose that influenza virus RNPs are routed from the nucleus to the pericentriolar recycling endosome (RE), where they access a Rab11-dependent vesicular transport pathway to the cell periphery.

[1]  P. Digard,et al.  Functional domains of the influenza A virus PB2 protein: identification of NP- and PB1-binding sites. , 2004, Virology.

[2]  T. Wileman Aggresomes and pericentriolar sites of virus assembly: cellular defense or viral design? , 2007, Annual review of microbiology.

[3]  Nicole C. Robb,et al.  NS2/NEP protein regulates transcription and replication of the influenza virus RNA genome. , 2009, The Journal of general virology.

[4]  E. Medcalf,et al.  Modulation of Nuclear Localization of the Influenza Virus Nucleoprotein through Interaction with Actin Filaments , 1999, Journal of Virology.

[5]  D. Nayak,et al.  influenza virus-infected cells . proteins with cellular cytoskeletal elements in Association of influenza virus NP and M 1 , 1996 .

[6]  D. Ellis,et al.  A functional link between the actin cytoskeleton and lipid rafts during budding of filamentous influenza virions. , 2002, Virology.

[7]  M. Amorim,et al.  Nuclear Export of Influenza A Virus mRNAs Requires Ongoing RNA Polymerase II Activity , 2007, Traffic.

[8]  E Meijering,et al.  Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images , 2004, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[9]  O. Weisz,et al.  Apical trafficking in epithelial cells: signals, clusters and motors , 2009, Journal of Cell Science.

[10]  P. Roberts,et al.  Host cell dependence of viral morphology. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[11]  R. Compans,et al.  Effect of cytochalasin B on the maturation of enveloped viruses , 1979, The Journal of experimental medicine.

[12]  M. Amorim,et al.  Lipid Raft‐Dependent Targeting of the Influenza A Virus Nucleoprotein to the Apical Plasma Membrane , 2004, Traffic.

[13]  David E. Misek,et al.  Microtubules and actin filaments are not critically involved in the biogenesis of epithelial cell surface polarity , 1986, The Journal of cell biology.

[14]  E. Medcalf,et al.  Identification of the domains of the influenza A virus M1 matrix protein required for NP binding, oligomerization and incorporation into virions , 2007, The Journal of general virology.

[15]  A. Osterhaus,et al.  Efficient generation and growth of influenza virus A/PR/8/34 from eight cDNA fragments. , 2004, Virus research.

[16]  J. Gog,et al.  Mutational Analysis of cis-Acting RNA Signals in Segment 7 of Influenza A Virus , 2008, Journal of Virology.

[17]  S. Pleschka,et al.  A plasmid-based reverse genetics system for influenza A virus , 1996, Journal of virology.

[18]  J. McCauley,et al.  Edinburgh Research Explorer Interaction of the influenza virus nucleoprotein with the cellular CRM1-mediated nuclear export pathway , 2022 .

[19]  Jonas Grossmann,et al.  Identification of cellular interaction partners of the influenza virus ribonucleoprotein complex and polymerase complex using proteomic-based approaches. , 2007, Journal of proteome research.

[20]  U. Landegren,et al.  Direct observation of individual endogenous protein complexes in situ by proximity ligation , 2006, Nature Methods.

[21]  B. Moss,et al.  Vaccinia Virus Intracellular Movement Is Associated with Microtubules and Independent of Actin Tails , 2001, Journal of Virology.

[22]  S. Boulo,et al.  Nuclear traffic of influenza virus proteins and ribonucleoprotein complexes. , 2007, Virus research.

[23]  Julia R Gog,et al.  Genome packaging in influenza A virus. , 2010, The Journal of general virology.

[24]  M. Amorim,et al.  Increased amounts of the influenza virus nucleoprotein do not promote higher levels of viral genome replication. , 2004, The Journal of general virology.

[25]  Wendy S. Barclay,et al.  A Complicated Message: Identification of a Novel PB1-Related Protein Translated from Influenza A Virus Segment 2 mRNA , 2009, Journal of Virology.

[26]  M. Zerial,et al.  Rab11 regulates recycling through the pericentriolar recycling endosome , 1996, The Journal of cell biology.

[27]  S. Ferguson,et al.  Regulation of Angiotensin II Type 1A Receptor Intracellular Retention, Degradation, and Recycling by Rab5, Rab7, and Rab11 GTPases* , 2004, Journal of Biological Chemistry.

[28]  C. Colangelo,et al.  Cellular Proteins in Influenza Virus Particles , 2008, PLoS pathogens.

[29]  K. Mostov,et al.  Receptor-mediated transcytosis of IgA in MDCK cells is via apical recycling endosomes , 1994, The Journal of cell biology.

[30]  T. Zimmermann,et al.  Kinesin-dependent movement on microtubules precedes actin-based motility of vaccinia virus , 2001, Nature Cell Biology.

[31]  P. Digard,et al.  Individual influenza A virus mRNAs show differential dependence on cellular NXF1/TAP for their nuclear export , 2010, The Journal of general virology.

[32]  G. Spudich,et al.  Optineurin links myosin VI to the Golgi complex and is involved in Golgi organization and exocytosis , 2005, The Journal of cell biology.

[33]  D. Scott,et al.  Arf6 and microtubules in adhesion-dependent trafficking of lipid rafts , 2007, Nature Cell Biology.

[34]  S. Goodbourn,et al.  NS1 Proteins of Avian Influenza A Viruses Can Act as Antagonists of the Human Alpha/Beta Interferon Response , 2006, Journal of Virology.

[35]  Yuko Morikawa,et al.  Visualization of microtubule-mediated transport of influenza viral progeny ribonucleoprotein. , 2007, Microbes and infection.

[36]  Xianghong Jing,et al.  Influenza Virus M2 Protein Mediates ESCRT-Independent Membrane Scission , 2010, Cell.

[37]  P. M. Breitenfeld,et al.  The formation of fowl plague virus antigens in infected cells, as studied with fluorescent antibodies. , 1957, Virology.

[38]  J. Taubenberger,et al.  Influenza virus evolution, host adaptation, and pandemic formation. , 2010, Cell host & microbe.

[39]  P. Digard,et al.  The Rab11 Pathway Is Required for Influenza A Virus Budding and Filament Formation , 2010, Journal of Virology.

[40]  F. Maxfield,et al.  Iterative fractionation of recycling receptors from lysosomally destined ligands in an early sorting endosome , 1989, The Journal of cell biology.

[41]  P. Digard,et al.  Budding of filamentous and non-filamentous influenza A virus occurs via a VPS4 and VPS28-independent pathway. , 2009, Virology.

[42]  S. Inglis,et al.  Complex formation between influenza virus polymerase proteins expressed in Xenopus oocytes , 1989, Virology.

[43]  Z. Zhou,et al.  Influenza virus morphogenesis and budding , 2009, Virus Research.

[44]  M. Arcangeletti,et al.  Modification of cytoskeleton and prosome networks in relation to protein synthesis in influenza A virus-infected LLC-MK2 cells. , 1997, Virus research.

[45]  J. C. von Kirchbach,et al.  Nuclear dynamics of influenza A virus ribonucleoproteins revealed by live-cell imaging studies , 2009, Virology.

[46]  R. Lamb,et al.  Influenza Virus Hemagglutinin and Neuraminidase, but Not the Matrix Protein, Are Required for Assembly and Budding of Plasmid-Derived Virus-Like Particles , 2007, Journal of Virology.

[47]  B. Sodeik,et al.  Viral interactions with the cytoskeleton: a hitchhiker's guide to the cell , 2006, Cellular microbiology.

[48]  Renaud Mahieux,et al.  Centrosome and retroviruses: The dangerous liaisons , 2007, Retrovirology.

[49]  T. Takimoto,et al.  Trafficking of Sendai Virus Nucleocapsids Is Mediated by Intracellular Vesicles , 2010, PloS one.

[50]  A. Kawaguchi,et al.  Involvement of vesicular trafficking system in membrane targeting of the progeny influenza virus genome. , 2010, Microbes and infection.

[51]  D. Strickland,et al.  In migrating fibroblasts, recycling receptors are concentrated in narrow tubules in the pericentriolar area, and then routed to the plasma membrane of the leading lamella , 1994, The Journal of cell biology.

[52]  P. Digard,et al.  The influenza virus nucleoprotein: a multifunctional RNA-binding protein pivotal to virus replication. , 2002, The Journal of general virology.

[53]  K. Martin,et al.  Nuclear transport of influenza virus ribonucleoproteins: The viral matrix protein (M1) promotes export and inhibits import , 1991, Cell.

[54]  Y. Altschuler,et al.  Association of Rab25 and Rab11a with the apical recycling system of polarized Madin-Darby canine kidney cells. , 1999, Molecular biology of the cell.

[55]  D. Sabatini,et al.  Microtubule-acting drugs lead to the nonpolarized delivery of the influenza hemagglutinin to the cell surface of polarized Madin-Darby canine kidney cells , 1987, The Journal of cell biology.

[56]  H. Mollenhauer,et al.  Alteration of intracellular traffic by monensin; mechanism, specificity and relationship to toxicity , 1990, Biochimica et Biophysica Acta (BBA) - Reviews on Biomembranes.

[57]  R. Lamb,et al.  Influenza virus budding does not require a functional AAA+ ATPase, VPS4. , 2010, Virus research.

[58]  H. Browne,et al.  The Transmembrane Domain and Cytoplasmic Tail of Herpes Simplex Virus Type 1 Glycoprotein H Play a Role in Membrane Fusion , 2002, Journal of Virology.

[59]  Chen Chen,et al.  Using single-particle tracking to study nuclear trafficking of viral genes. , 2004, Biophysical journal.

[60]  P. H. Anborgh,et al.  beta 2-adrenergic receptor internalization, endosomal sorting, and plasma membrane recycling are regulated by rab GTPases. , 2000, The Journal of biological chemistry.

[61]  D. Sabatini,et al.  Hydrolysis of GTP on rab11 is required for the direct delivery of transferrin from the pericentriolar recycling compartment to the cell surface but not from sorting endosomes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.