BowTieBuilder: modeling signal transduction pathways
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Andreas Zell | Andreas Dräger | Adrian Schröder | Jochen Supper | Hannes Planatscher | Lucía Spangenberg | A. Zell | Adrian Schröder | L. Spangenberg | J. Supper | Andreas Dräger | Hannes Planatscher
[1] H. Kitano,et al. A comprehensive map of the toll-like receptor signaling network , 2006, Molecular systems biology.
[2] Gabriele Ausiello,et al. MINT: the Molecular INTeraction database , 2006, Nucleic Acids Res..
[3] David S. Johnson,et al. Computers and Intractability: A Guide to the Theory of NP-Completeness , 1978 .
[4] R. Ozawa,et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[5] Michael Ruogu Zhang,et al. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. , 1998, Molecular biology of the cell.
[6] B. Snel,et al. STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. , 2000, Nucleic acids research.
[7] Adam J. Smith,et al. The Database of Interacting Proteins: 2004 update , 2004, Nucleic Acids Res..
[8] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[9] B. Schwikowski,et al. A network of protein–protein interactions in yeast , 2000, Nature Biotechnology.
[10] H. Kitano,et al. G-Protein Coupled Receptor Signaling Architecture of Mammalian Immune Cells , 2009, PloS one.
[11] Ioannis Xenarios,et al. DIP: the Database of Interacting Proteins , 2000, Nucleic Acids Res..
[12] Michael L. Creech,et al. Integration of biological networks and gene expression data using Cytoscape , 2007, Nature Protocols.
[13] J. Doyle,et al. Bow Ties, Metabolism and Disease , 2022 .
[14] PagelPhilipp,et al. The MIPS mammalian protein--protein interaction database , 2005 .
[15] R. Prim. Shortest connection networks and some generalizations , 1957 .
[16] Christian von Mering,et al. STRING: a database of predicted functional associations between proteins , 2003, Nucleic Acids Res..
[17] D. Botstein,et al. Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.
[18] A. V. Panyukov. The Steiner Problem in Graphs: Topological Methods of Solution , 2004 .
[19] Yin Liu,et al. A computational approach for ordering signal transduction pathway components from genomics and proteomics Data , 2004, BMC Bioinformatics.
[20] Mike Tyers,et al. BioGRID: a general repository for interaction datasets , 2005, Nucleic Acids Res..
[21] David Botstein,et al. GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes , 2004, Bioinform..
[22] Martin Vingron,et al. IntAct: an open source molecular interaction database , 2004, Nucleic Acids Res..
[23] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[24] Christian von Mering,et al. STRING 8—a global view on proteins and their functional interactions in 630 organisms , 2008, Nucleic Acids Res..
[25] angesichts der Corona-Pandemie,et al. UPDATE , 1973, The Lancet.
[26] Roded Sharan,et al. Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks , 2006, J. Comput. Biol..
[27] Andreas Zell,et al. Modeling gene regulation and spatial organization of sequence based motifs , 2008, 2008 8th IEEE International Conference on BioInformatics and BioEngineering.
[28] Ioannis Xenarios,et al. DIP: The Database of Interacting Proteins: 2001 update , 2001, Nucleic Acids Res..
[29] Roded Sharan,et al. QPath: a method for querying pathways in a protein-protein interaction network , 2006, BMC Bioinformatics.
[30] M. Karin,et al. Mammalian MAP kinase signalling cascades , 2001, Nature.
[31] Kiyoko F. Aoki-Kinoshita,et al. From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..
[32] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[33] M. Mendenhall,et al. Regulation of Cdc28 Cyclin-Dependent Protein Kinase Activity during the Cell Cycle of the Yeast Saccharomyces cerevisiae , 1998, Microbiology and Molecular Biology Reviews.
[34] Jiong Yang,et al. PathFinder: mining signal transduction pathway segments from protein-protein interaction networks , 2007, BMC Bioinformatics.
[35] Jing Zhao,et al. Hierarchical modularity of nested bow-ties in metabolic networks , 2006, BMC Bioinformatics.
[36] Martin Steffen,et al. Automated modelling of signal transduction networks , 2002, BMC Bioinformatics.
[37] Edsger W. Dijkstra,et al. A note on two problems in connexion with graphs , 1959, Numerische Mathematik.
[38] Chak-Kuen Wong,et al. A faster approximation algorithm for the Steiner problem in graphs , 1986, Acta Informatica.
[39] Christian von Mering,et al. STRING 7—recent developments in the integration and prediction of protein interactions , 2006, Nucleic Acids Res..
[40] H. Kitano,et al. Robustness trade-offs and host–microbial symbiosis in the immune system , 2006, Molecular systems biology.
[41] Christian von Mering,et al. STRING: known and predicted protein–protein associations, integrated and transferred across organisms , 2004, Nucleic Acids Res..