GeneValidator: identify problems with protein-coding gene predictions
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Ismail Moghul | Yannick Wurm | Claudio Bustos | Anurag Priyam | Monica-Andreea Dragan | Y. Wurm | Ismail Moghul | Anurag Priyam | Monica-Andreea Drăgan | Claudio Bustos | C. Bustos
[1] Keith Bradnam,et al. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes , 2007, Bioinform..
[2] Erich Bornberg-Bauer,et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality , 2013, Genome research.
[3] M. Borodovsky,et al. Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm , 2014, Nucleic acids research.
[4] The Uniprot Consortium,et al. UniProt: a hub for protein information , 2014, Nucleic Acids Res..
[5] Volker Brendel,et al. yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes , 2006, Genome Biology.
[6] Daniel MacLean,et al. Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics , 2012, Bioinform..
[7] Karen Eilbeck,et al. Quantitative measures for the management and comparison of annotated genomes , 2009, BMC Bioinformatics.
[8] I. Dubchak,et al. Visualizing genomes: techniques and challenges , 2010, Nature Methods.
[9] Martin Kollmar,et al. A novel hybrid gene prediction method employing protein multiple sequence alignments , 2011, Bioinform..
[10] James A. Thomson,et al. A cost-effective RNA sequencing protocol for large-scale gene expression studies , 2015, Scientific Reports.
[11] R. Guigó,et al. ASPic-GeneID: A Lightweight Pipeline for Gene Prediction and Alternative Isoforms Detection , 2013, BioMed research international.
[12] Ioannis Xenarios,et al. Visualization and quality assessment of de novo genome assemblies , 2011, Bioinform..
[13] David Haussler,et al. Using native and syntenically mapped cDNA alignments to improve de novo gene finding , 2008, Bioinform..
[14] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[15] Sofia M. C. Robb,et al. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. , 2007, Genome research.
[16] Paul J. Kennedy,et al. Evaluating High-Throughput Ab Initio Gene Finders to Discover Proteins Encoded in Eukaryotic Pathogen Genomes Missed by Laboratory Techniques , 2012, PloS one.
[17] Ning Ma,et al. BLAST+: architecture and applications , 2009, BMC Bioinformatics.
[18] Yannick Wurm. Avoid having to retract your genomics analysis. , 2015 .
[19] Yannick Wurm,et al. Ant genomics (Hymenoptera: Formicidae): challenges to overcome and opportunities to seize , 2015 .
[20] M. Yandell,et al. A beginner's guide to eukaryotic genome annotation , 2012, Nature Reviews Genetics.
[21] María Martín,et al. UniProt: A hub for protein information , 2015 .
[22] Winston A Hide,et al. Big data: The future of biocuration , 2008, Nature.
[23] Ian Korf,et al. Gene finding in novel genomes , 2004, BMC Bioinformatics.