Kap104p-mediated Nuclear Import

Kap104p is a Saccharomyces cerevisiaenuclear import receptor for two essential mRNA-binding proteins, Nab2p and Nab4p/Hrp1p. We demonstrate direct binding of Kap104p to each of these substrates. We have defined the nuclear localization signals in both Nab2p and Nab4p/Hrp1p by Kap104p binding in vitroand KAP104-dependent nuclear import in vivo. The nuclear localization signals map to similar arginine/glycine-rich RNA-binding domains in both proteins and are thus termed rg-nuclear localization signals to distinguish them from classical nuclear localization signals. We also demonstrate that Kap104p, like other known β-karyopherins (or importins), interacts directly with the small GTPase Ran/Gsp1. However, unlike other known import factors, Ran binding is not sufficient to mediate release of substrates from Kap104p; efficient Ran-GTP-mediated substrate release requires RNA. Also, addition of Kap104p to Nab2p and Nab4p/Hrp1p prebound to single-stranded DNA-cellulose stimulated release of both proteins from the resin. We suggest a simple cycle in which Nab2p and Nab4p/Hrp1p, upon import, are released in the nucleus at sites of transcription by the concerted action of Ran-GTP and binding to newly synthesized mRNA. The resulting ribonucleoprotein complexes are exported to the cytoplasm, where Kap104p rebinds to Nab2p and Nab4p/Hrp1p, contributing to their release from mRNA.

[1]  G. Dreyfuss,et al.  A Novel Receptor-Mediated Nuclear Protein Import Pathway , 1996, Cell.

[2]  G. Dreyfuss,et al.  The hnRNP C proteins contain a nuclear retention sequence that can override nuclear export signals , 1996, The Journal of cell biology.

[3]  D. Rhodes,et al.  Molecular interactions between the importin α/β heterodimer and proteins involved in vertebrate nuclear protein import , 1997 .

[4]  G. Blobel,et al.  Karyopherin beta2 mediates nuclear import of a mRNA binding protein. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[5]  T. Copeland,et al.  rev protein of human immunodeficiency virus type 1 affects the stability and transport of the viral mRNA. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[6]  E. Hartmann,et al.  Isolation of a protein that is essential for the first step of nuclear protein import , 1994, Cell.

[7]  J. Swedlow,et al.  Characterization of nuclear polyadenylated RNA-binding proteins in Saccharomyces cerevisiae , 1994, The Journal of cell biology.

[8]  Marco M. Kessler,et al.  Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast. , 1997, Genes & development.

[9]  C. Burd,et al.  hnRNP proteins and the biogenesis of mRNA. , 1993, Annual review of biochemistry.

[10]  G. Dreyfuss,et al.  A Role for the M9 Transport Signal of hnRNP A1 in mRNA Nuclear Export , 1997, The Journal of cell biology.

[11]  J. Olivo,et al.  Receptor-mediated substrate translocation through the nuclear pore complex without nucleotide triphosphate hydrolysis , 1999, Current Biology.

[12]  R. Laskey,et al.  Nuclear targeting sequences--a consensus? , 1991, Trends in biochemical sciences.

[13]  Matthias Mann,et al.  Mtr10p functions as a nuclear import receptor for the mRNA‐binding protein Npl3p , 1998, The EMBO journal.

[14]  G. Blobel,et al.  Two novel related yeast nucleoporins Nup170p and Nup157p: complementation with the vertebrate homologue Nup155p and functional interactions with the yeast nuclear pore-membrane protein Pom152p , 1995, The Journal of cell biology.

[15]  M. Emerman,et al.  The rev gene product of the human immunodeficiency virus affects envelope-specific RNA localization , 1989, Cell.

[16]  A. Lamond,et al.  Identification of hSRP1 alpha as a functional receptor for nuclear localization sequences. , 1995, Science.

[17]  G. Blobel,et al.  Identification of a protein complex that is required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[18]  C. Dargemont,et al.  Evidence for a role of CRM1 in signal-mediated nuclear protein export. , 1997, Science.

[19]  G. Dreyfuss,et al.  Signal-mediated nuclear export pathways of proteins and RNAs. , 1996, Trends in cell biology.

[20]  P. Silver,et al.  Potential RNA binding proteins in Saccharomyces cerevisiae identified as suppressors of temperature-sensitive mutations in NPL3. , 1996, Genetics.

[21]  U. Kutay,et al.  The translocation of transportin–cargo complexes through nuclear pores is independent of both Ran and energy , 1999, Current Biology.

[22]  R. Kraft,et al.  Two different subunits of importin cooperate to recognize nuclear localization signals and bind them to the nuclear envelope , 1995, Current Biology.

[23]  G. Blobel,et al.  A Distinct Nuclear Import Pathway Used by Ribosomal Proteins , 1997, Cell.

[24]  G. Dreyfuss,et al.  Nuclear export of proteins and RNAs. , 1997, Current opinion in cell biology.

[25]  B. Daneholt,et al.  A nuclear cap-binding complex binds Balbiani ring pre-mRNA cotranscriptionally and accompanies the ribonucleoprotein particle during nuclear export , 1996, The Journal of cell biology.

[26]  C. Cole,et al.  Nucleocytoplasmic transport: Driving and directing transport , 1998, Current Biology.

[27]  P. Silver,et al.  Arginine methylation facilitates the nuclear export of hnRNP proteins. , 1998, Genes & development.

[28]  E. O’Shea,et al.  Phosphorylation regulates association of the transcription factor Pho4 with its import receptor Pse1/Kap121. , 1998, Genes & development.

[29]  J. Keene,et al.  A common RNA recognition motif identified within a defined U1 RNA binding domain of the 70K U1 snRNP protein , 1989, Cell.

[30]  Karsten Weis,et al.  Exportin 1 (Crm1p) Is an Essential Nuclear Export Factor , 1997, Cell.

[31]  G. Dreyfuss,et al.  Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. , 1992, The EMBO journal.

[32]  G. Dreyfuss,et al.  Shuttling of pre-mRNA binding proteins between nucleus and cytoplasm , 1992, Nature.

[33]  E. Schwoebel,et al.  Ran-dependent Signal-mediated Nuclear Import Does Not Require GTP Hydrolysis by Ran* , 1998, The Journal of Biological Chemistry.

[34]  G. Blobel,et al.  Protein import into nuclei: association and dissociation reactions involving transport substrate, transport factors, and nucleoporins , 1995, Cell.

[35]  L. Gerace,et al.  Nuclear export signals and the fast track to the cytoplasm , 1995, Cell.

[36]  G. Blobel,et al.  A Distinct and Parallel Pathway for the Nuclear Import of an mRNA-binding Protein , 1997, The Journal of cell biology.

[37]  G. Blobel,et al.  A novel ubiquitin-like modification modulates the partitioning of the Ran-GTPase-activating protein RanGAP1 between the cytosol and the nuclear pore complex , 1996, The Journal of cell biology.

[38]  G. Dreyfuss,et al.  A nuclear export signal in hnRNP A1: A signal-mediated, temperature-dependent nuclear protein export pathway , 1995, Cell.

[39]  I. Macara,et al.  Requirement of guanosine triphosphate-bound ran for signal-mediated nuclear protein export. , 1997, Science.

[40]  U. Kutay,et al.  The asymmetric distribution of the constituents of the Ran system is essential for transport into and out of the nucleus , 1997, The EMBO journal.

[41]  B. Cullen,et al.  Definition of a Consensus Transportin-specific Nucleocytoplasmic Transport Signal* , 1999, The Journal of Biological Chemistry.

[42]  G. Blobel,et al.  The Nuclear Transport Factor Karyopherin Binds Stoichiometrically to Ran-GTP and Inhibits the Ran GTPase Activating Protein (*) , 1996, The Journal of Biological Chemistry.

[43]  B. Cullen,et al.  Identification and Functional Characterization of a Novel Nuclear Localization Signal Present in the Yeast Nab2 Poly(A)+ RNA Binding Protein , 1998, Molecular and Cellular Biology.

[44]  M. Swanson,et al.  NAB2: a yeast nuclear polyadenylated RNA-binding protein essential for cell viability , 1993, Molecular and cellular biology.

[45]  T. Nishimoto,et al.  RCC1 in the Ran pathway. , 1996, Journal of biochemistry.

[46]  G. Blobel,et al.  Kap104p: A Karyopherin Involved in the Nuclear Transport of Messenger RNA Binding Proteins , 1996, Science.

[47]  M. Rout,et al.  Karyopherins and kissing cousins. , 1998, Trends in cell biology.

[48]  Minoru Yoshida,et al.  CRM1 Is an Export Receptor for Leucine-Rich Nuclear Export Signals , 1997, Cell.

[49]  P. Silver,et al.  A protein that shuttles between the nucleus and the cytoplasm is an important mediator of RNA export. , 1996, Genes & development.

[50]  G. Blobel,et al.  Transport routes through the nuclear pore complex. , 1998, Current opinion in cell biology.

[51]  M. Moore Ran and Nuclear Transport* , 1998, The Journal of Biological Chemistry.

[52]  G. Dreyfuss,et al.  Functional Conservation of the Transportin Nuclear Import Pathway in Divergent Organisms , 1998, Molecular and Cellular Biology.

[53]  G. Dreyfuss,et al.  Transportin-mediated Nuclear Import of Heterogeneous Nuclear RNP Proteins , 1997, The Journal of cell biology.

[54]  S. Adam,et al.  Cytosolic proteins that specifically bind nuclear location signals are receptors for nuclear import , 1991, Cell.

[55]  S. Le,et al.  The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA , 1989, Nature.

[56]  E. Hartmann,et al.  Distinct functions for the two importin subunits in nuclear protein import , 1995, Nature.

[57]  Elena Smirnova,et al.  Yrb4p, a yeast Ran–GTP‐binding protein involved in import of ribosomal protein L25 into the nucleus , 1997, The EMBO journal.

[58]  F. Melchior,et al.  A Small Ubiquitin-Related Polypeptide Involved in Targeting RanGAP1 to Nuclear Pore Complex Protein RanBP2 , 1997, Cell.

[59]  Y. Lefebvre,et al.  Nuclear localization signals overlap DNA- or RNA-binding domains in nucleic acid-binding proteins. , 1995, Nucleic acids research.

[60]  P. Sharp,et al.  Regulation by HIV Rev depends upon recognition of splice sites , 1989, Cell.

[61]  I. Mattaj,et al.  Nucleocytoplasmic transport: the soluble phase. , 1998, Annual review of biochemistry.

[62]  G. Blobel,et al.  Mammalian karyopherin alpha 1 beta and alpha 2 beta heterodimers: alpha 1 or alpha 2 subunit binds nuclear localization signal and beta subunit interacts with peptide repeat-containing nucleoporins. , 1995, Proceedings of the National Academy of Sciences of the United States of America.