BUSCO: Assessing Genome Assembly and Annotation Completeness.
暂无分享,去创建一个
[1] Mark Borodovsky,et al. Eukaryotic Gene Prediction Using GeneMark.hmm‐E and GeneMark‐ES , 2011, Current protocols in bioinformatics.
[2] N. Nagarajan,et al. The draft genome of tropical fruit durian (Durio zibethinus) , 2017, Nature Genetics.
[3] Pawel Herzyk,et al. De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species , 2018, BMC Genomics.
[4] G. Ast,et al. Alternative splicing and evolution: diversification, exon definition and function , 2010, Nature Reviews Genetics.
[5] Evgeny M. Zdobnov,et al. OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs , 2018, Nucleic Acids Res..
[6] Martin Kollmar,et al. Nuclear codon reassignments in the genomics era and mechanisms behind their evolution. , 2017, BioEssays : news and reviews in molecular, cellular and developmental biology.
[7] Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata , 2018, Genome Announcements.
[8] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[9] Robert M. Waterhouse,et al. BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics , 2017, bioRxiv.
[10] Han Fang,et al. GenomeScope: Fast reference-free genome profiling from short reads , 2016, bioRxiv.
[11] Martin Kollmar,et al. A novel hybrid gene prediction method employing protein multiple sequence alignments , 2011, Bioinform..
[12] Robert M. Waterhouse,et al. Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders , 2017, Genome biology and evolution.
[13] N. S. Araujo,et al. RNA-Seq reveals that mitochondrial genes and long non-coding RNAs may play important roles in the bivoltine generations of the non-social Neotropical bee Tetrapedia diversipes , 2018, Apidologie.
[14] Ian Korf,et al. Gene finding in novel genomes , 2004, BMC Bioinformatics.
[15] Paul Medvedev,et al. Informed and automated k-mer size selection for genome assembly , 2013, Bioinform..
[16] Sean R. Eddy,et al. Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..
[17] Robert M. Waterhouse,et al. Correlating Traits of Gene Retention, Sequence Divergence, Duplicability and Essentiality in Vertebrates, Arthropods, and Fungi , 2010, Genome biology and evolution.
[18] Olivier Panaud,et al. Oak genome reveals facets of long lifespan , 2018, Nature Plants.
[19] Ning Ma,et al. BLAST+: architecture and applications , 2009, BMC Bioinformatics.
[20] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[21] M. Berriman,et al. REAPR: a universal tool for genome assembly evaluation , 2013, Genome Biology.
[22] Eric T. Domyan,et al. Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia) , 2017, G3: Genes, Genomes, Genetics.
[23] Keith Bradnam,et al. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes , 2007, Bioinform..