An image-based segmentation recommender using crowdsourcing and transfer learning for skin lesion extraction

Abstract Deep learning is widely used in medical applications regarding the high performance it can achieve. In this paper, we propose a segmentation recommender based on crowdsourcing and transfer learning for skin lesion extraction. In fact, after collecting and pre-processing data from the ISIC2017 segmentation challenge, we tested two pre-trained architectures (VGG16 and ResNet50) to extract features from the convolutional parts. Then, a classifier with an output layer, composed of five nodes representing the segmentation methods’ classes, was built. Thus, the proposed architecture is able to dynamically predict the most appropriate segmentation technique for the detection of skin lesions in any input image. Experimental results prove the capability of the proposed image-based method to improve the segmentation performance comparatively to the state of the art methods.

[1]  João Manuel R. S. Tavares,et al.  A computational approach for detecting pigmented skin lesions in macroscopic images , 2016, Expert Syst. Appl..

[2]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[3]  João Paulo Papa,et al.  Computational methods for pigmented skin lesion classification in images: review and future trends , 2018, Neural Computing and Applications.

[4]  David Dagan Feng,et al.  Automatic Skin Lesion Analysis using Large-scale Dermoscopy Images and Deep Residual Networks , 2017, ArXiv.

[5]  Nilanjan Dey,et al.  Social Group Optimization Supported Segmentation and Evaluation of Skin Melanoma Images , 2018, Symmetry.

[6]  Pedro Costa,et al.  Data-Driven Color Augmentation Techniques for Deep Skin Image Analysis , 2017, ArXiv.

[7]  Lucia Maddalena,et al.  Segmenting Dermoscopic Images , 2017, ArXiv.

[8]  Hongdiao Wen,et al.  II-FCN for skin lesion analysis towards melanoma detection , 2017, ArXiv.

[9]  Ming Chao,et al.  Improving Dermoscopic Image Segmentation With Enhanced Convolutional-Deconvolutional Networks , 2017, IEEE Journal of Biomedical and Health Informatics.

[10]  João Manuel R. S. Tavares,et al.  A Review of the Quantification and Classification of Pigmented Skin Lesions: From Dedicated to Hand-Held Devices , 2015, Journal of Medical Systems.

[11]  Matt Berseth,et al.  ISIC 2017 - Skin Lesion Analysis Towards Melanoma Detection , 2017, ArXiv.

[12]  Saeid Nahavandi,et al.  Spatially Aware Melanoma Segmentation Using Hybrid Deep Learning Techniques , 2017, ArXiv.

[13]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[14]  E. Zagrouba,et al.  A Collaborative System for Pigmented Skin Lesions Malignancy Tracking , 2007, 2007 IEEE International Workshop on Imaging Systems and Techniques.

[15]  G. Wiselin Jiji,et al.  An Extensive Technique to Detect and Analyze Melanoma: A Challenge at the International Symposium on Biomedical Imaging (ISBI) 2017 , 2017, ArXiv.

[16]  Ezzeddine Zagrouba,et al.  SEMIAUTOMATIC DETECTION OF TUMORAL ZONE , 2011 .

[17]  Michael S. Bernstein,et al.  ImageNet Large Scale Visual Recognition Challenge , 2014, International Journal of Computer Vision.

[18]  Huazhu Fu,et al.  Retinal vessel segmentation via deep learning network and fully-connected conditional random fields , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[19]  Noel C. F. Codella,et al.  Skin lesion analysis toward melanoma detection: A challenge at the 2017 International symposium on biomedical imaging (ISBI), hosted by the international skin imaging collaboration (ISIC) , 2016, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

[20]  Jacob Scharcanski,et al.  A simple weighted thresholding method for the segmentation of pigmented skin lesions in macroscopic images , 2017, Pattern Recognit..

[21]  Palaniappan Mirunalini,et al.  Automatic Skin Lesion Segmentation using Semi-supervised Learning Technique , 2017, ArXiv.

[22]  Bohyung Han,et al.  Learning Multi-domain Convolutional Neural Networks for Visual Tracking , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[23]  Ghassan Hamarneh,et al.  Fully Convolutional Neural Networks to Detect Clinical Dermoscopic Features , 2017, IEEE Journal of Biomedical and Health Informatics.

[24]  David Alvarez,et al.  k-Means Clustering and Ensemble of Regressions: An Algorithm for the ISIC 2017 Skin Lesion Segmentation Challenge , 2017, ArXiv.

[25]  LinLin Shen,et al.  Skin Lesion Analysis towards Melanoma Detection Using Deep Learning Network , 2017, Sensors.

[26]  Hongdong Li,et al.  Robust Visual Tracking with Deep Convolutional Neural Network Based Object Proposals on PETS , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW).

[27]  Seyed-Ahmad Ahmadi,et al.  V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation , 2016, 2016 Fourth International Conference on 3D Vision (3DV).

[28]  John R. Smith,et al.  Deep Learning, Sparse Coding, and SVM for Melanoma Recognition in Dermoscopy Images , 2015, MLMI.

[29]  João Manuel R. S. Tavares,et al.  Effective features to classify skin lesions in dermoscopic images , 2017, Expert Syst. Appl..

[30]  A. Jemal,et al.  Cancer statistics, 2017 , 2017, CA: a cancer journal for clinicians.

[31]  João Manuel R. S. Tavares,et al.  Computational diagnosis of skin lesions from dermoscopic images using combined features , 2019, Neural Computing and Applications.

[32]  João Manuel R. S. Tavares,et al.  Pattern Recognition in Macroscopic and Dermoscopic Images for Skin Lesion Diagnosis , 2017 .

[33]  Begonya Garcia-Zapirain,et al.  Segmentation of skin lesions based on fuzzy classification of pixels and histogram thresholding , 2017, ArXiv.

[34]  Hao Chang Skin cancer reorganization and classification with deep neural network , 2017, ArXiv.

[35]  Seunghoon Hong,et al.  Learning Deconvolution Network for Semantic Segmentation , 2015, 2015 IEEE International Conference on Computer Vision (ICCV).

[36]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[37]  Ali Gooya,et al.  Segmentation of Lesions in Dermoscopy Images Using Saliency Map And Contour Propagation , 2017, ArXiv.

[38]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[39]  Lin Yang,et al.  3D Segmentation of Glial Cells Using Fully Convolutional Networks and k-Terminal Cut , 2016, MICCAI.

[40]  Frank Hutter,et al.  Speeding Up Automatic Hyperparameter Optimization of Deep Neural Networks by Extrapolation of Learning Curves , 2015, IJCAI.

[41]  Lisa Tang,et al.  Deep 3D Convolutional Encoder Networks With Shortcuts for Multiscale Feature Integration Applied to Multiple Sclerosis Lesion Segmentation , 2016, IEEE Transactions on Medical Imaging.

[42]  Eduardo Valle,et al.  RECOD Titans at ISIC Challenge 2017 , 2017, ArXiv.

[43]  Chunming Li,et al.  Global and Local Information Based Deep Network for Skin Lesion Segmentation , 2017, ArXiv.

[44]  Víctor Osma-Ruiz,et al.  Skin lesion segmentation based on preprocessing, thresholding and neural networks , 2017, ArXiv.

[45]  Zhen Ma,et al.  A Novel Approach to Segment Skin Lesions in Dermoscopic Images Based on a Deformable Model , 2016, IEEE Journal of Biomedical and Health Informatics.

[46]  João Manuel R. S. Tavares,et al.  From dermoscopy to mobile teledermatology , 2015 .

[47]  Mun-Taek Choi,et al.  Skin lesion segmentation in dermoscopy images via deep full resolution convolutional networks , 2018, Comput. Methods Programs Biomed..

[48]  João Paulo Papa,et al.  Computational methods for the image segmentation of pigmented skin lesions: A review , 2016, Comput. Methods Programs Biomed..

[49]  Dhanesh Ramachandram,et al.  LesionSeg: Semantic segmentation of skin lesions using Deep Convolutional Neural Network , 2017, ArXiv.

[50]  Thomas Brox,et al.  3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation , 2016, MICCAI.