Multigrid solver for the reference interaction site model of molecular liquids theory
暂无分享,去创建一个
Maxim V. Fedorov | Wolfgang Hackbusch | Volodymyr P. Sergiievskyi | W. Hackbusch | M. Fedorov | V. Sergiievskyi
[1] Maxim V Fedorov,et al. An accurate prediction of hydration free energies by combination of molecular integral equations theory with structural descriptors. , 2010, The journal of physical chemistry. B.
[2] Roberto Cammi,et al. Continuum Solvation Models in Chemical Physics , 2007 .
[3] M. Kinoshita. Structure of aqueous electrolyte solutions near a hydrophobic surface , 2007 .
[4] S. Sakaki,et al. An integral equation theory for 3D solvation structure: A new procedure free from 3D Fourier transform , 2006 .
[5] K. Dill,et al. Orientation-dependent integral equation theory for a two-dimensional model of water , 2003 .
[6] H. Krienke,et al. Improvements of DRISM calculations: symmetry reduction and hybrid algorithms. , 2008, Physical chemistry chemical physics : PCCP.
[7] J. Kirkwood. Statistical Mechanics of Fluid Mixtures , 1935 .
[8] M. Fedorov,et al. Wavelet method for solving integral equations of simple liquids , 2005 .
[9] Berend Smit,et al. Understanding Molecular Simulation , 2001 .
[10] Benoît Roux,et al. NUMERICAL SOLUTION OF THE HYPERNETTED CHAIN EQUATION FOR A SOLUTE OF ARBITRARY GEOMETRY IN THREE DIMENSIONS , 1995 .
[11] Maxim V. Fedorov,et al. Mathematik in den Naturwissenschaften Leipzig Low-Rank wavelet solver for the Ornstein-Zernike integral equation , 2005 .
[12] M. Gillan. A new method of solving the liquid structure integral equations , 1979 .
[13] J. Goodman,et al. To switch or not to switch: the effects of potassium and sodium ions on alpha-poly-L-glutamate conformations in aqueous solutions. , 2009, Journal of the American Chemical Society.
[14] L. Scales,et al. Efficient solution of liquid state integral equations using the Newton-GMRES algorithm , 1999 .
[15] G. Zérah. An efficient newton's method for the numerical solution of fluid integral equations , 1985 .
[16] Wolfgang Hackbusch,et al. Multi-grid methods and applications , 1985, Springer series in computational mathematics.
[17] L. Gendre,et al. Classical density functional theory of solvation in molecular solvents: Angular grid implementation , 2009 .
[18] W. Hackbusch,et al. F ¨ Ur Mathematik in Den Naturwissenschaften Leipzig a Multigrid Solver for the Integral Equations of the Theory of Liquids , 2022 .
[19] Sauer,et al. Multicanonical multigrid Monte Carlo method. , 1994, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[20] Galli,et al. Real-space adaptive-coordinate electronic-structure calculations. , 1995, Physical review. B, Condensed matter.
[21] R. Friesner,et al. Efficient recursive implementation of the modified Broyden method and the direct inversion in the iterative subspace method: Acceleration of self-consistent calculations , 1998 .
[22] Maxim V Fedorov,et al. The effect of sodium chloride on poly-l-glutamate conformation. , 2009, Chemical communications.
[23] G. Morriss,et al. Recent Progress in the Statistical Mechanical Mechanics of Interaction Site Fluids , 2007 .
[24] Fumio Hirata,et al. Reference interaction site model self-consistent field study for solvation effect on carbonyl compounds in aqueous solution , 1994 .
[25] Maxim V. Fedorov,et al. Wavelet algorithm for solving integral equations of molecular liquids. A test for the reference interaction site model , 2004, J. Comput. Chem..
[26] Shigeyoshi Sakaki,et al. A highly parallelizable integral equation theory for three dimensional solvent distribution function: application to biomolecules. , 2009, The Journal of chemical physics.
[27] J. Guthrie,et al. A blind challenge for computational solvation free energies: introduction and overview. , 2009, The journal of physical chemistry. B.
[28] Maxim V Fedorov,et al. Accurate calculations of the hydration free energies of druglike molecules using the reference interaction site model. , 2010, The Journal of chemical physics.
[29] G. Morriss,et al. Recent progress in the statistical mechanics of interaction site fluids , 1990 .
[30] Stanislav Labík,et al. A rapidly convergent method of solving the OZ equation , 1985 .
[31] C. Kelley,et al. A fast solver for the Ornstein-Zernike equations , 2004 .
[32] David Chandler,et al. Optimized Cluster Expansions for Classical Fluids. II. Theory of Molecular Liquids , 1972 .
[33] Seiichiro Ten-no,et al. Free energy of solvation for the reference interaction site model: Critical comparison of expressions , 2001 .
[34] Fumio Hirata,et al. Analytical energy gradient for the reference interaction site model multiconfigurational self‐consistent‐field method: Application to 1,2‐difluoroethylene in aqueous solution , 1996 .
[35] Fumio Hirata,et al. Potential of Mean Force between Two Molecular Ions in a Polar Molecular Solvent: A Study by the Three-Dimensional Reference Interaction Site Model , 1999 .
[36] T. Torsti,et al. Multigrid method for electronic structure calculations , 2001, cond-mat/0101233.
[37] S. Sakaki,et al. New generation of the reference interaction site model self-consistent field method: introduction of spatial electron density distribution to the solvation theory. , 2007, The Journal of chemical physics.
[38] David Chandler,et al. Free energy functions in the extended RISM approximation , 1985 .
[39] R. Gebauer,et al. Density functional theory of solvation in a polar solvent: extracting the functional from homogeneous solvent simulations. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[40] J. Tomasi,et al. Quantum mechanical continuum solvation models. , 2005, Chemical reviews.
[41] M. Fedorov,et al. Wavelet treatment of structure and thermodynamics of simple liquids. , 2004, The Journal of chemical physics.
[42] You-nian Wang,et al. Implicit and electrostatic particle-in-cell/Monte Carlo model in two-dimensional and axisymmetric geometry: I. Analysis of numerical techniques , 2010, 1001.2969.
[43] M. Kinoshita,et al. Entropic insertion of a big sphere into a cylindrical vessel , 2010 .
[44] Jason Crain,et al. Improved estimates for hydration free energy obtained by the reference interaction site model , 2007 .
[45] Shigeyoshi Sakaki,et al. An analysis of 3D solvation structure in biomolecules: application to coiled coil serine and bacteriorhodopsin. , 2010, The journal of physical chemistry. B.
[46] K. Ng. Hypernetted chain solutions for the classical one‐component plasma up to Γ=7000 , 1974 .
[47] Fumio Hirata,et al. Solution of three‐dimensional reference interaction site model and hypernetted chain equations for simple point charge water by modified method of direct inversion in iterative subspace , 1999 .
[48] Herbert H. H. Homeier,et al. Iterative solution of the Ornstein-Zernike equation with various closures using vector extrapolation , 1995, chem-ph/9509001.
[49] S. Sakaki,et al. Analytical energy gradient for reference interaction site model self-consistent field explicitly including spatial electron density distribution. , 2009, The Journal of chemical physics.
[50] 平田 文男. Molecular theory of solvation , 2003 .
[51] H. Fenniri,et al. Structural water drives self-assembly of organic rosette nanotubes and holds host atoms in the channel. , 2010, Chemphyschem : a European journal of chemical physics and physical chemistry.
[52] Jacopo Tomasi,et al. Molecular Interactions in Solution: An Overview of Methods Based on Continuous Distributions of the Solvent , 1994 .
[53] E. Meeron. Erratum : Series Expansion of Distribution Functions in Multicomponent Fluid Systems , 1957 .
[54] J. Lebowitz,et al. Mean Spherical Model for Lattice Gases with Extended Hard Cores and Continuum Fluids , 1966 .