Enhanced cellulose degradation by targeted integration of a cohesin-fused β-glucosidase into the Clostridium thermocellum cellulosome

The conversion of recalcitrant plant-derived cellulosic biomass into biofuels is dependent on highly efficient cellulase systems that produce near-quantitative levels of soluble saccharides. Similar to other fungal and bacterial cellulase systems, the multienzyme cellulosome system of the anaerobic, cellulolytic bacterium Clostridium thermocellum is strongly inhibited by the major end product cellobiose. Cellobiose-induced inhibition can be relieved via its cleavage to noninhibitory glucose by the addition of exogenous noncellulosomal enzyme β-glucosidase; however, because the cellulosome is adsorbed to the insoluble substrate only a fraction of β-glucosidase would be available to the cellulosome. Towards this end, we designed a chimeric cohesin-fused β-glucosidase (BglA-CohII) that binds directly to the cellulosome through an unoccupied dockerin module of its major scaffoldin subunit. The β-glucosidase activity is thus focused at the immediate site of cellobiose production by the cellulosomal enzymes. BglA-CohII was shown to retain cellobiase activity and was readily incorporated into the native cellulosome complex. Surprisingly, it was found that the native C. thermocellum cellulosome exists as a homooligomer and the high-affinity interaction of BglA-CohII with the scaffoldin moiety appears to dissociate the oligomeric state of the cellulosome. Complexation of the cellulosome and BglA-CohII resulted in higher overall degradation of microcrystalline cellulose and pretreated switchgrass compared to the native cellulosome alone or in combination with wild-type BglA in solution. These results demonstrate the effect of enzyme targeting and its potential for enhanced degradation of cellulosic biomass.

[1]  Raphael Lamed,et al.  The cellulose paradox: pollutant par excellence and/or a reclaimable natural resource? , 2004, Biodegradation.

[2]  E. Bayer,et al.  Characterization of a dockerin‐based affinity tag: application for purification of a broad variety of target proteins , 2010, Journal of molecular recognition : JMR.

[3]  Shen-Long Tsai,et al.  Functional Assembly of Minicellulosomes on the Saccharomyces cerevisiae Cell Surface for Cellulose Hydrolysis and Ethanol Production , 2009, Applied and Environmental Microbiology.

[4]  E. Bayer,et al.  Action of Designer Cellulosomes on Homogeneous Versus Complex Substrates , 2005, Journal of Biological Chemistry.

[5]  E. Bayer,et al.  Degradation of Cellulose Substrates by Cellulosome Chimeras , 2002, The Journal of Biological Chemistry.

[6]  J. Woodward Immobilized cellulases for cellulose utilization , 1989 .

[7]  E. Bayer,et al.  The cellulosome--a treasure-trove for biotechnology. , 1994, Trends in biotechnology.

[8]  D. Kilburn,et al.  Enzyme immobilization using a cellulose-binding domain: properties of a beta-glucosidase fusion protein. , 1991, Enzyme and microbial technology.

[9]  A. Koivula,et al.  Cellulose-binding domains promote hydrolysis of different sites on crystalline cellulose. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[10]  Raphael Lamed,et al.  Cellodextrin and Laminaribiose ABC Transporters in Clostridium thermocellum , 2008, Journal of bacteriology.

[11]  D. Kilburn,et al.  Enzyme Immobilization Using the Cellulose-Binding Domain of a Cellulomonas Fimi Exoglucanase , 1989, Bio/Technology.

[12]  P. A. Jensen,et al.  Effect and Modeling of Glucose Inhibition and In Situ Glucose Removal During Enzymatic Hydrolysis of Pretreated Wheat Straw , 2010, Applied biochemistry and biotechnology.

[13]  Jonathan Caspi,et al.  Cellulase-Xylanase Synergy in Designer Cellulosomes for Enhanced Degradation of a Complex Cellulosic Substrate , 2010, mBio.

[14]  E. Bayer,et al.  Isolation and properties of a major cellobiohydrolase from the cellulosome of Clostridium thermocellum , 1991, Journal of bacteriology.

[15]  Edward A Bayer,et al.  Lignocellulose conversion to biofuels: current challenges, global perspectives. , 2009, Current opinion in biotechnology.

[16]  A. Demain,et al.  Addition of cloned β-glucosidase enhances the degradation of crystalline cellulose by the Clostridium thermocellum cellulase complex , 1989 .

[17]  Charlotte K. Williams,et al.  The Path Forward for Biofuels and Biomaterials , 2006, Science.

[18]  Y.‐H.P. Zhang,et al.  Substrate channeling and enzyme complexes for biotechnological applications. , 2011, Biotechnology advances.

[19]  Roy H. Doi,et al.  Cellulosomes: plant-cell-wall-degrading enzyme complexes , 2004, Nature Reviews Microbiology.

[20]  H. Strobel Growth of the thermophilic bacterium Clostridium thermocellum in continuous culture , 1995, Current Microbiology.

[21]  E. Bayer,et al.  Affinity digestion for the near-total recovery of purified cellulosome from Clostridium thermocellum , 1992 .

[22]  Michael Taylor,et al.  An overview of second generation biofuel technologies. , 2010, Bioresource technology.

[23]  W. Reiter Biosynthesis and properties of the plant cell wall. , 2002, Current opinion in plant biology.

[24]  E. Bayer,et al.  The cellulosomes: multienzyme machines for degradation of plant cell wall polysaccharides. , 2004, Annual review of microbiology.

[25]  I. Kataeva,et al.  Do domain interactions of glycosyl hydrolases from Clostridium thermocellum contribute to protein thermostability? , 2001, Protein engineering.

[26]  B. Webb,et al.  Structural characterization of type II dockerin module from the cellulosome of Clostridium thermocellum: calcium-induced effects on conformation and target recognition. , 2005, Biochemistry.

[27]  Frédéric Monot,et al.  Comparative kinetic analysis of two fungal β-glucosidases , 2010, Biotechnology for biofuels.

[28]  P Béguin,et al.  A new type of cohesin domain that specifically binds the dockerin domain of the Clostridium thermocellum cellulosome-integrating protein CipA , 1996, Journal of bacteriology.

[29]  Harry J. Gilbert,et al.  Cellulosomes: highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates. , 2010, Annual review of biochemistry.

[30]  L. Lynd,et al.  How biotech can transform biofuels , 2008, Nature Biotechnology.

[31]  F. Gräbnitz,et al.  Structure of the β‐glucosidase gene bglA of Clostridium thermocellum , 1991 .

[32]  I. Pretorius,et al.  Effect of the cellulose-binding domain on the catalytic activity of a β-glucosidase from Saccharomycopsis fibuligera , 2007, Journal of Industrial Microbiology & Biotechnology.

[33]  A. Demain,et al.  Cellulase, Clostridia, and Ethanol , 2005, Microbiology and Molecular Biology Reviews.

[34]  M. Himmel,et al.  The potential of cellulases and cellulosomes for cellulosic waste management. , 2007, Current opinion in biotechnology.

[35]  M. Himmel,et al.  Microbial enzyme systems for biomass conversion: emerging paradigms , 2010 .

[36]  E. Bayer,et al.  Matching fusion protein systems for affinity analysis of two interacting families of proteins: the cohesin–dockerin interaction , 2005, Journal of molecular recognition : JMR.

[37]  E. Bayer,et al.  Efficient cellulose solubilization by a combined cellulosome-β-glucosidase system , 1991 .

[38]  E. Bayer,et al.  The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides. , 1999, Trends in microbiology.

[39]  E. Bayer,et al.  Cohesin‐dockerin microarray: Diverse specificities between two complementary families of interacting protein modules , 2008, Proteomics.

[40]  L. Bachas,et al.  Oriented immobilization of proteins , 1998 .

[41]  Raphael Lamed,et al.  Major characteristics of the cellulolytic system of Clostridium thermocellum coincide with those of the purified cellulosome , 1985 .

[42]  E. Bayer,et al.  Interplay between Clostridium thermocellum Family 48 and Family 9 Cellulases in Cellulosomal versus Noncellulosomal States , 2010, Applied and Environmental Microbiology.

[43]  F. Gräbnitz,et al.  Structure of the beta-glucosidase gene bglA of Clostridium thermocellum. Sequence analysis reveals a superfamily of cellulases and beta-glycosidases including human lactase/phlorizin hydrolase. , 1991, European Journal of Biochemistry.

[44]  C. Felby,et al.  Yield-determining factors in high-solids enzymatic hydrolysis of lignocellulose , 2009, Biotechnology for biofuels.

[45]  David K. Johnson,et al.  Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production , 2007, Science.

[46]  Lee R Lynd,et al.  Cellulose utilization by Clostridium thermocellum: bioenergetics and hydrolysis product assimilation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.