Insights into cargo sorting by SNX32 and its role in neurite outgrowth

Sorting nexins (SNX) are a family of proteins containing the Phox homology domain, which shows a preferential endo-membrane association and regulates cargo sorting processes. Here, we established that SNX32, an SNX-BAR (Bin/Amphiphysin/Rvs) sub-family member associates with SNX4 via its BAR domain and the residues A226, Q259, E256, R366 of SNX32, and Y258, S448 of SNX4 that lie at the interface of these two SNX proteins mediate this association. SNX32, via its PX domain, interacts with the transferrin receptor (TfR) and Cation-Independent Mannose-6-Phosphate Receptor (CIMPR), and the conserved F131 in its PX domain is important in stabilizing these interactions. Silencing of SNX32 leads to a defect in intracellular trafficking of TfR and CIMPR. Further, using SILAC-based differential proteomics of the wild-type and the mutant SNX32, impaired in cargo binding, we identified Basigin (BSG), an immunoglobulin superfamily member, as a potential interactor of SNX32 in SHSY5Y cells. We then demonstrated that SNX32 binds to BSG through its PX domain and facilitates its trafficking to the cell surface. In neuroglial cell lines, silencing of SNX32 leads to defects in neuronal differentiation. Moreover, abrogation in lactate transport in the SNX32-depleted cells led us to propose that SNX32 may contribute to maintaining the neuroglial coordination via its role in BSG trafficking and the associated monocarboxylate transporter activity. Taken together, our study showed that SNX32 mediates the trafficking of specific cargo molecules along distinct pathways.

[1]  V. Broccoli,et al.  MCT1-dependent energetic failure and neuroinflammation underlie optic nerve degeneration in Wolfram syndrome mice , 2022, bioRxiv.

[2]  P. Jose,et al.  Sorting nexins: role in the regulation of blood pressure , 2021, The FEBS journal.

[3]  W. Grueber,et al.  The Immunoglobulin Superfamily Member Basigin Is Required for Complex Dendrite Formation in Drosophila , 2021, Frontiers in Cellular Neuroscience.

[4]  D. Hassabis,et al.  Protein complex prediction with AlphaFold-Multimer , 2021, bioRxiv.

[5]  S. Ovchinnikov,et al.  ColabFold: making protein folding accessible to all , 2022, Nature Methods.

[6]  Oriol Vinyals,et al.  Highly accurate protein structure prediction with AlphaFold , 2021, Nature.

[7]  N. Sousa,et al.  Sorting Out Sorting Nexins Functions in the Nervous System in Health and Disease , 2021, Molecular Neurobiology.

[8]  Derek Xu,et al.  The ELAV/Hu protein Found in neurons regulates cytoskeletal and ECM adhesion inputs for space-filling dendrite growth , 2020, PLoS genetics.

[9]  B. Morrison,et al.  Lactate Transporters Mediate Glia-Neuron Metabolic Crosstalk in Homeostasis and Disease , 2020, Frontiers in Cellular Neuroscience.

[10]  Gregor P. Jose,et al.  PLiMAP: Proximity‐Based Labeling of Membrane‐Associated Proteins , 2020, Current protocols in protein science.

[11]  Gregor P. Jose,et al.  A facile, sensitive and quantitative membrane‐binding assay for proteins , 2019, Traffic.

[12]  G. Bashaw,et al.  Molecular identification of a BAR domain-containing coat complex for endosomal recycling of transmembrane proteins , 2019, Nature Cell Biology.

[13]  R. Teasdale,et al.  Classification of the human phox homology (PX) domains based on their phosphoinositide binding specificities , 2019, Nature communications.

[14]  T. Tonozuka,et al.  The phosphorylation of sorting nexin 5 at serine 226 regulates retrograde transport and macropinocytosis , 2018, PloS one.

[15]  E. Burstein,et al.  Expression and purification of the SNX1/SNX6 complex. , 2018, Protein expression and purification.

[16]  Peng Cheng,et al.  Lactate transport facilitates neurite outgrowth , 2018, Bioscience reports.

[17]  J. Dengjel,et al.  Cargo-selective SNX-BAR proteins mediate retromer trimer independent retrograde transport , 2017, The Journal of cell biology.

[18]  P. Cullen,et al.  Sequence-dependent cargo recognition by SNX-BARs mediates retromer-independent transport of CI-MPR , 2017, The Journal of cell biology.

[19]  J. Gilleron,et al.  Essential and selective role of SNX12 in transport of endocytic and retrograde cargo , 2017, Journal of Cell Science.

[20]  M. Lucas,et al.  Retromer , 2017, Current Biology.

[21]  R. Teasdale,et al.  Structural basis for the hijacking of endosomal sorting nexin proteins by Chlamydia trachomatis , 2017, eLife.

[22]  Na-Young Kim,et al.  Sorting nexin-4 regulates β-amyloid production by modulating β-site-activating cleavage enzyme-1 , 2017, Alzheimer's & Dementia.

[23]  R. Irannejad,et al.  Retromer Endosome Exit Domains Serve Multiple Trafficking Destinations and Regulate Local G Protein Activation by GPCRs , 2016, Current Biology.

[24]  J. Bonifacino,et al.  Structural Mechanism for Cargo Recognition by the Retromer Complex , 2016, Cell.

[25]  T. Muramatsu Basigin (CD147), a multifunctional transmembrane glycoprotein with various binding partners , 2015, Journal of biochemistry.

[26]  Xue-chu Zhen,et al.  Protease Omi facilitates neurite outgrowth in mouse neuroblastoma N2a cells by cleaving transcription factor E2F1 , 2015, Acta Pharmacologica Sinica.

[27]  P. Cullen,et al.  Retromer and sorting nexins in endosomal sorting. , 2015, Biochemical Society transactions.

[28]  L. Bergersen Lactate Transport and Signaling in the Brain: Potential Therapeutic Targets and Roles in Body—Brain Interaction , 2015, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[29]  Huaxi Xu,et al.  Sorting nexin 27 regulates Aβ production through modulating γ-secretase activity. , 2014, Cell reports.

[30]  David Fenyö,et al.  A robust pipeline for rapid production of versatile nanobody repertoires , 2014, Nature Methods.

[31]  L. M. Stevers,et al.  Rapid Mapping of Interactions between Human SNX-BAR Proteins Measured In Vitro by AlphaScreen and Single-molecule Spectroscopy * , 2014, Molecular & Cellular Proteomics.

[32]  G. Drin,et al.  A Four-Step Cycle Driven by PI(4)P Hydrolysis Directs Sterol/PI(4)P Exchange by the ER-Golgi Tether OSBP , 2013, Cell.

[33]  T. Morgan,et al.  Pgrmc1: new roles in the microglial mediation of progesterone-antagonism of estradiol-dependent neurite sprouting and in microglial activation , 2013, Front. Neurosci..

[34]  D. Jelinek,et al.  CD147 regulates the expression of MCT1 and lactate export in multiple myeloma cells , 2013, Cell cycle.

[35]  Jia-Jia Liu,et al.  PtdIns(4)P regulates retromer–motor interaction to facilitate dynein–cargo dissociation at the trans-Golgi network , 2013, Nature Cell Biology.

[36]  S. Lipton,et al.  Loss of sorting nexin 27 contributes to excitatory synaptic dysfunction via modulation of glutamate receptor recycling in Down syndrome , 2013, Nature Medicine.

[37]  J. Hurley,et al.  Molecular basis for SNX-BAR-mediated assembly of distinct endosomal sorting tubules , 2012, The EMBO journal.

[38]  R. Parton,et al.  SNX12 Role in Endosome Membrane Transport , 2012, PloS one.

[39]  K. Nakayama,et al.  Protrudin serves as an adaptor molecule that connects KIF5 and its cargoes in vesicular transport during process formation , 2011, Molecular biology of the cell.

[40]  Z. Lasiecka,et al.  Mechanisms of polarized membrane trafficking in neurons — Focusing in on endosomes , 2011, Molecular and Cellular Neuroscience.

[41]  O. Kovtun,et al.  Structural and thermodynamic analysis of the GFP:GFP‐nanobody complex , 2010, Protein science : a publication of the Protein Society.

[42]  P. Verkade,et al.  SNX-BAR proteins in phosphoinositide-mediated, tubular-based endosomal sorting. , 2010, Seminars in cell & developmental biology.

[43]  K. Sandvig,et al.  Sorting nexin 8 regulates endosome-to-Golgi transport. , 2009, Biochemical and biophysical research communications.

[44]  C. Zhang,et al.  The retromer component SNX6 interacts with dynactin p150Glued and mediates endosome-to-TGN transport , 2009, Cell Research.

[45]  H. Korswagen,et al.  The Retromer Coat Complex Coordinates Endosomal Sorting and Dynein-Mediated Transport, with Carrier Recognition by the trans-Golgi Network , 2009, Developmental cell.

[46]  N. Bright,et al.  Membrane recruitment of the cargo-selective retromer subcomplex is catalysed by the small GTPase Rab7 and inhibited by the Rab-GAP TBC1D5 , 2009, Journal of Cell Science.

[47]  R. Huebner,et al.  Discovery of New Cargo Proteins that Enter Cells through Clathrin‐Independent Endocytosis , 2009, Traffic.

[48]  H. Hilbi,et al.  Rab1 Guanine Nucleotide Exchange Factor SidM Is a Major Phosphatidylinositol 4-Phosphate-binding Effector Protein of Legionella pneumophila , 2009, Journal of Biological Chemistry.

[49]  T. Wassmer,et al.  SNX4 coordinates endosomal sorting of TfnR with dynein-mediated transport into the endocytic recycling compartment , 2007, Nature Cell Biology.

[50]  Y. Kalaidzidis Intracellular objects tracking. , 2007, European journal of cell biology.

[51]  N. Philp,et al.  Monocarboxylate transporter 4 regulates maturation and trafficking of CD147 to the plasma membrane in the metastatic breast cancer cell line MDA-MB-231. , 2007, Cancer research.

[52]  M. Tessier-Lavigne,et al.  Robo1 and Robo2 Control the Development of the Lateral Olfactory Tract , 2007, The Journal of Neuroscience.

[53]  L. Bergersen,et al.  Is lactate food for neurons? Comparison of monocarboxylate transporter subtypes in brain and muscle , 2007, Neuroscience.

[54]  T. Wassmer,et al.  A loss-of-function screen reveals SNX5 and SNX6 as potential components of the mammalian retromer , 2006, Journal of Cell Science.

[55]  Susumu Mori,et al.  Robo1 regulates the development of major axon tracts and interneuron migration in the forebrain , 2006, Development.

[56]  D. Douguet,et al.  The pleckstrin homology domain of phospholipase Cbeta transmits enzymatic activation through modulation of the membrane-domain orientation. , 2006, Biochemistry.

[57]  Javier G. Magadán,et al.  Rab22a Regulates the Sorting of Transferrin to Recycling Endosomes , 2006, Molecular and Cellular Biology.

[58]  Y. Kalaidzidis,et al.  Rab Conversion as a Mechanism of Progression from Early to Late Endosomes , 2005, Cell.

[59]  R. Wyman,et al.  Basigin (EMMPRIN/CD147) interacts with integrin to affect cellular architecture , 2005, Journal of Cell Science.

[60]  Judith Klumperman,et al.  Sorting Nexin-1 Mediates Tubular Endosome-to-TGN Transport through Coincidence Sensing of High- Curvature Membranes and 3-Phosphoinositides , 2004, Current Biology.

[61]  M. Seaman Cargo-selective endosomal sorting for retrieval to the Golgi requires retromer , 2004, The Journal of cell biology.

[62]  M. Ehlers,et al.  Neuronal Polarity and Trafficking , 2003, Neuron.

[63]  T. Muramatsu,et al.  Loss of MCT1, MCT3, and MCT4 expression in the retinal pigment epithelium and neural retina of the 5A11/basigin-null mouse. , 2003, Investigative ophthalmology & visual science.

[64]  S. Dowler,et al.  Protein Lipid Overlay Assay , 2002, Science's STKE.

[65]  Rein Aasland,et al.  The phosphatidylinositol 3‐phosphate‐binding FYVE finger , 2002, FEBS letters.

[66]  O. Marín,et al.  Slit Proteins Prevent Midline Crossing and Determine the Dorsoventral Position of Major Axonal Pathways in the Mammalian Forebrain , 2002, Neuron.

[67]  L. Karlsson,et al.  A large family of endosome-localized proteins related to sorting nexin 1. , 2001, The Biochemical journal.

[68]  A. Barclay,et al.  CD147 is tightly associated with lactate transporters MCT1 and MCT4 and facilitates their cell surface expression , 2000, The EMBO journal.

[69]  Markus Missler,et al.  SV2A and SV2B Function as Redundant Ca2+ Regulators in Neurotransmitter Release , 1999, Neuron.

[70]  Gero Miesenböck,et al.  Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins , 1998, Nature.

[71]  K. Yamamura,et al.  A null mutation in basigin, an immunoglobulin superfamily member, indicates its important roles in peri-implantation development and spermatogenesis. , 1998, Developmental biology.

[72]  Marc Tessier-Lavigne,et al.  Roundabout Controls Axon Crossing of the CNS Midline and Defines a Novel Subfamily of Evolutionarily Conserved Guidance Receptors , 1998, Cell.

[73]  S. McLaughlin,et al.  The pleckstrin homology domain of phospholipase C-delta 1 binds with high affinity to phosphatidylinositol 4,5-bisphosphate in bilayer membranes. , 1995, Biochemistry.

[74]  J. Dodge,et al.  Wortmannin, a potent and selective inhibitor of phosphatidylinositol-3-kinase. , 1994, Cancer research.

[75]  C. Lagenaur,et al.  Monoclonal M6 antibody interferes with neurite extension of cultured neurons. , 1992, Journal of neurobiology.

[76]  R. Teasdale,et al.  Insights into the PX (phox-homology) domain and SNX (sorting nexin) protein families: structures, functions and roles in disease. , 2012, The Biochemical journal.