Evaluation of artificial neural networks for fungal identification, employing morphometric data from spores of Pestalotiopsis species

The relative abilities of the multilayer perceptron, radial basis function, asymmetric radial basis function and learning vector quantization artificial neural networks (ANNs) and two non-neural methods to identify fungal spores were compared. ANNs were trained on morphometric data from spores of Pestalotiopsis spp. and a few species in the related Truncatella and Monochaetia. The optimized neural and statistical classifiers had similar identification success on an unseen data set – between 76-0 and 78-8% of a 16-species group and between 63-0 and 67-7% of a 19-species group. The relative merits of each classifier are discussed, as is the potential of ANNs in mycology.

[1]  J. Mordue Another unusual species of Pestalotiopsis: P. montellicoides sp.nov. , 1986 .

[2]  LiMin Fu,et al.  Neural networks in computer intelligence , 1994 .

[3]  Robert J. Schalkoff,et al.  Pattern recognition - statistical, structural and neural approaches , 1991 .

[4]  Lynne Boddy,et al.  A comparison of some neural and non-neural methods for identification of phytoplankton from flow cytometry data , 1996, Comput. Appl. Biosci..

[5]  Richard Lippmann,et al.  Neural Network Classifiers Estimate Bayesian a posteriori Probabilities , 1991, Neural Computation.

[6]  C. W. Morris,et al.  Neural network analysis of flow cytometric data for 40 marine phytoplankton species. , 1994, Cytometry.

[7]  Teuvo Kohonen,et al.  The self-organizing map , 1990 .

[8]  R. J. Pankhurst,et al.  Practical Taxonomic Computing , 1991 .

[9]  Charles W. Butler,et al.  Naturally intelligent systems , 1990 .

[10]  Lynne Boddy,et al.  Identification of basidiomycete spores by neural network analysis of flow cytometry data , 1992 .

[11]  N. D. Stone,et al.  Application of Artificial Intelligence to Systematics: Systex—A Prototype Expert System for Species Identification , 1987 .

[12]  R. L. Steyaert Contribution a l'etude monographique de Pestalotia de Not. et Monochaetia Sacc. (Truncatella gen. nov. et Pestalotiopsis gen. nov.) , 1949 .

[13]  Simon Haykin,et al.  Neural Networks: A Comprehensive Foundation , 1998 .

[14]  Teuvo Kohonen,et al.  An introduction to neural computing , 1988, Neural Networks.

[15]  Teuvo Kohonen,et al.  Self-Organization and Associative Memory , 1988 .

[16]  E. F. Guba Monograph of Monochaetia and Pestalotia , 1960 .

[17]  Richard P. Lippmann,et al.  An introduction to computing with neural nets , 1987 .

[18]  O. Petrini,et al.  Knowledge-based expert systems in mycology: Tolerance is a necessary attribute , 1989 .