Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome.
暂无分享,去创建一个
T. Spector | J. Bell | Qiang Feng | Huijue Jia | Zhou Lan | Huihua Xia | Junhua Li | Xun Xu | J. Al-Aama | Huanming Yang | Jian Wang | K. Kristiansen | Jun Wang | Hailiang Xie | Ruijin Guo | Huanzi Zhong | Bingcai Qin | K. Ward | M. Jackson | Yan Xia | Xu Chen | Bing Chen | C. Xu | Fei Li | C. Steves | Xun Xu | Q. Feng | Jian Wang
[1] Jun Wang,et al. Metagenome-wide association studies: fine-mining the microbiome , 2016, Nature Reviews Microbiology.
[2] Huanming Yang,et al. Deep sequencing of the MHC region in the Chinese population contributes to studies of complex disease , 2016, Nature Genetics.
[3] Emily R. Davenport,et al. Genetic Determinants of the Gut Microbiome in UK Twins. , 2016, Cell host & microbe.
[4] P. Bork,et al. Durable coexistence of donor and recipient strains after fecal microbiota transplantation , 2016, Science.
[5] Nicola Zamboni,et al. Gut Microbiota Orchestrates Energy Homeostasis during Cold , 2015, Cell.
[6] Emily R. Davenport,et al. Genome-Wide Association Studies of the Human Gut Microbiota , 2015, PloS one.
[7] Qiang Feng,et al. Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer , 2015, Gut.
[8] Eleazar Eskin,et al. Genetic and environmental control of host-gut microbiota interactions , 2015, Genome research.
[9] Qiang Feng,et al. The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment , 2015, Nature Medicine.
[10] Luis Pedro Coelho,et al. Structure and function of the global ocean microbiome , 2015, Science.
[11] Herbert Tilg,et al. Gut microbiome development along the colorectal adenoma-carcinoma sequence , 2015 .
[12] Katherine H. Huang,et al. Identifying personal microbiomes using metagenomic codes , 2015, Proceedings of the National Academy of Sciences.
[13] Mario Roederer,et al. The Genetic Architecture of the Human Immune System: A Bioresource for Autoimmunity and Disease Pathogenesis , 2015, Cell.
[14] M. Pirinen,et al. The fine-scale genetic structure of the British population , 2015, Nature.
[15] Elhanan Borenstein,et al. Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species , 2015, Cell.
[16] S. Prakash,et al. Bacterial Bile Metabolising Gene Abundance in Crohn's, Ulcerative Colitis and Type 2 Diabetes Metagenomes , 2014, PloS one.
[17] Fei Gao,et al. An integrated epigenomic analysis for type 2 diabetes susceptibility loci in monozygotic twins , 2014, Nature Communications.
[18] Angela C. Poole,et al. Human Genetics Shape the Gut Microbiome , 2014, Cell.
[19] Jens Roat Kultima,et al. Potential of fecal microbiota for early‐stage detection of colorectal cancer , 2014 .
[20] Eran Segal,et al. Transkingdom Control of Microbiota Diurnal Oscillations Promotes Metabolic Homeostasis , 2014, Cell.
[21] B. Becher,et al. Innate lymphoid cells regulate intestinal epithelial cell glycosylation , 2014, Science.
[22] Rustem F. Ismagilov,et al. Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness , 2014, Nature.
[23] Beiwen Zheng,et al. Alterations of the human gut microbiome in liver cirrhosis , 2014, Nature.
[24] Rob Knight,et al. Longitudinal analysis of microbial interaction between humans and the indoor environment , 2014, Science.
[25] Brian J. Bennett,et al. Responsiveness of cardiometabolic-related microbiota to diet is influenced by host genetics , 2014, Mammalian Genome.
[26] W. D. de Vos,et al. Differential Modulation by Akkermansia muciniphila and Faecalibacterium prausnitzii of Host Peripheral Lipid Metabolism and Histone Acetylation in Mouse Gut Organoids , 2014, mBio.
[27] Jens Roat Kultima,et al. An integrated catalog of reference genes in the human gut microbiome , 2014, Nature Biotechnology.
[28] K. Kaukinen,et al. Early Microbial Markers of Celiac Disease , 2014, Journal of clinical gastroenterology.
[29] Jens Roat Kultima,et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes , 2014, Nature Biotechnology.
[30] J. Tiedje,et al. Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data , 2014, mBio.
[31] Tanya M. Teslovich,et al. Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility , 2014, Nature Genetics.
[32] T. Junt,et al. Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis , 2014, Nature Medicine.
[33] Lawrence A. David,et al. Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.
[34] Alexandros Stamatakis,et al. Metagenomic species profiling using universal phylogenetic marker genes , 2013, Nature Methods.
[35] Christian Gieger,et al. Biomarkers for Type 2 Diabetes and Impaired Fasting Glucose Using a Nontargeted Metabolomics Approach , 2013, Diabetes.
[36] C. Huttenhower,et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis , 2013, eLife.
[37] Dmitry G. Alexeev,et al. Human gut microbiota community structures in urban and rural populations in Russia , 2013, Nature Communications.
[38] J. Clemente,et al. Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice , 2013, Science.
[39] P. Bork,et al. Accurate and universal delineation of prokaryotic species , 2013, Nature Methods.
[40] P. Bork,et al. Richness of human gut microbiome correlates with metabolic markers , 2013, Nature.
[41] Mathieu Almeida,et al. Dietary intervention impact on gut microbial gene richness , 2013, Nature.
[42] Jian Wang,et al. Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota , 2013, Nature Communications.
[43] J. Clemente,et al. The Long-Term Stability of the Human Gut Microbiota , 2013 .
[44] Fredrik H. Karlsson,et al. Gut metagenome in European women with normal, impaired and diabetic glucose control , 2013, Nature.
[45] Lucie Geurts,et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity , 2013, Proceedings of the National Academy of Sciences.
[46] Sang-Uk Seo,et al. Role of the gut microbiota in immunity and inflammatory disease , 2013, Nature Reviews Immunology.
[47] F. Bäckhed,et al. The gut microbiota — masters of host development and physiology , 2013, Nature Reviews Microbiology.
[48] Alireza Moayyeri,et al. COHORT PROFILE Cohort Profile : TwinsUK and Healthy Ageing Twin Study , 2013 .
[49] L. Ursell,et al. Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor , 2013, Science.
[50] Alison S. Waller,et al. Genomic variation landscape of the human gut microbiome , 2012, Nature.
[51] Peer Bork,et al. MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit , 2012, PloS one.
[52] Qiang Feng,et al. A metagenome-wide association study of gut microbiota in type 2 diabetes , 2012, Nature.
[53] Tanya M. Teslovich,et al. Large-scale association analyses identify new loci influencing glycemic traits and provide insight into the underlying biological pathways , 2012, Nature Genetics.
[54] Tanya M. Teslovich,et al. Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes , 2012, Nature Genetics.
[55] Robert W. Williams,et al. Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits , 2012, PloS one.
[56] Claude Bouchard,et al. A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance , 2012, Nature Genetics.
[57] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[58] J. Clemente,et al. Human gut microbiome viewed across age and geography , 2012, Nature.
[59] J. Clemente,et al. The Impact of the Gut Microbiota on Human Health: An Integrative View , 2012, Cell.
[60] Markus Perola,et al. Genome-wide association study identifies multiple loci influencing human serum metabolite levels , 2012, Nature Genetics.
[61] Philip Rosenstiel,et al. Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype , 2011, Proceedings of the National Academy of Sciences.
[62] Heng Li,et al. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data , 2011, Bioinform..
[63] F. Bushman,et al. Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes , 2011, Science.
[64] J. Nikkilä,et al. Secretor Genotype (FUT2 gene) Is Strongly Associated with the Composition of Bifidobacteria in the Human Intestine , 2011, PloS one.
[65] P. Bork,et al. Enterotypes of the human gut microbiome , 2011, Nature.
[66] Peer Bork,et al. iPath2.0: interactive pathway explorer , 2011, Nucleic Acids Res..
[67] M. Liebman,et al. Probiotics and other key determinants of dietary oxalate absorption. , 2011, Advances in nutrition.
[68] V. Mootha,et al. Metabolite profiles and the risk of developing diabetes , 2011, Nature Medicine.
[69] P. Rosenstiel,et al. Nod2 is essential for temporal development of intestinal microbial communities , 2011, Gut.
[70] Jesse R. Zaneveld,et al. Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins , 2011, Proceedings of the National Academy of Sciences.
[71] N. Pace,et al. Disease phenotype and genotype are associated with shifts in intestinal‐associated microbiota in inflammatory bowel diseases , 2011, Inflammatory bowel diseases.
[72] R. G. Alexander. Long-term stability , 2020, BDJ.
[73] Min Zhang,et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors , 2010, Proceedings of the National Academy of Sciences.
[74] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[75] R. Xavier,et al. Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43 , 2009, Nature.
[76] Siu-Ming Yiu,et al. SOAP2: an improved ultrafast tool for short read alignment , 2009, Bioinform..
[77] Meriem El Karoui,et al. A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera , 2008, Journal of bacteriology.
[78] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[79] L. Ferguson,et al. Role of gut microbiota in , 2009 .
[80] Rustam I. Aminov,et al. Predominant Role of Host Genetics in Controlling the Composition of Gut Microbiota , 2008, PloS one.
[81] T. Spector,et al. Dietary Patterns and Heritability of Food Choice in a UK Female Twin Cohort , 2007, Twin Research and Human Genetics.
[82] Matthew A. Zapala,et al. Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables , 2006, Proceedings of the National Academy of Sciences.
[83] John D. Storey. A direct approach to false discovery rates , 2002 .
[84] P. Lawson,et al. Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicatena sp. nov., isolated from human faeces. , 2002, International journal of systematic and evolutionary microbiology.
[85] Marti J. Anderson,et al. A new method for non-parametric multivariate analysis of variance in ecology , 2001 .
[86] A. Carothers. Methodology for Genetic Studies of Twins and Families , 1994 .
[87] Michael C. Neale,et al. Methodology for Genetic Studies of Twins and Families , 1992 .
[88] D. Sommers,et al. A longitudinal analysis , 1992 .
[89] N. Martin,et al. Model-fitting approaches to the analysis of human behaviour , 1978, Heredity.
[90] H. Kowarzyk. Structure and Function. , 1910, Nature.