Conjugation polymer nanobelts: a novel fluorescent sensing platform for nucleic acid detection

In this article, we report on the facile and rapid synthesis of conjugation polymer poly(p-phenylenediamine) nanobelts (PNs) via room temperature chemical oxidation polymerization of p-phenylenediamine monomers by ammonium persulfate in aqueous medium. We further demonstrate the proof-of-concept that PNs can be used as an effective fluorescent sensing platform for nucleic acid detection for the first time. The general concept used in this approach lies in the facts that the adsorption of the fluorescently labeled single-stranded DNA probe by PN leads to substantial fluorescence quenching, followed by specific hybridization with the complementary region of the target DNA sequence. This results in desorption of the hybridized complex from PN surface and subsequent recovery of fluorescence. We also show that the sensing platform described herein can be used for multiplexing detection of nucleic acid sequences.

[1]  Chunhai Fan,et al.  A Graphene Nanoprobe for Rapid, Sensitive, and Multicolor Fluorescent DNA Analysis , 2010 .

[2]  Huang-Hao Yang,et al.  A graphene platform for sensing biomolecules. , 2009, Angewandte Chemie.

[3]  A. Govindaraj,et al.  Binding of DNA nucleobases and nucleosides with graphene. , 2009, Chemphyschem : a European journal of chemical physics and physical chemistry.

[4]  Ronghua Yang,et al.  Noncovalent assembly of carbon nanotubes and single-stranded DNA: an effective sensing platform for probing biomolecular interactions. , 2008, Analytical chemistry.

[5]  Ronghua Yang,et al.  Carbon nanotube-quenched fluorescent oligonucleotides: probes that fluoresce upon hybridization. , 2008, Journal of the American Chemical Society.

[6]  L. Blum,et al.  DNA biosensors and microarrays. , 2008, Chemical reviews.

[7]  G. Darbha,et al.  Gold Nanoparticle Based FRET for DNA Detection , 2007 .

[8]  K. Gupta,et al.  Synthesis of hairpin probe using deoxyguanosine as a quencher: Fluorescence and hybridization studies. , 2007, Analytical biochemistry.

[9]  Chad A Mirkin,et al.  Multiplexed DNA detection with biobarcoded nanoparticle probes. , 2006, Angewandte Chemie.

[10]  Maitreya J. Dunham,et al.  Genome-Wide Detection of Polymorphisms at Nucleotide Resolution with a Single DNA Microarray , 2006, Science.

[11]  S. Marras Selection of fluorophore and quencher pairs for fluorescent nucleic acid hybridization probes. , 2006, Methods in molecular biology.

[12]  Weihong Tan,et al.  Monitoring nucleic acids using molecular beacons. , 2005, Current pharmaceutical biotechnology.

[13]  Huixiang Li,et al.  DNA sequence detection using selective fluorescence quenching of tagged oligonucleotide probes by gold nanoparticles. , 2004, Analytical chemistry.

[14]  S. Nie,et al.  Self-assembled nanoparticle probes for recognition and detection of biomolecules. , 2002, Journal of the American Chemical Society.

[15]  A. Libchaber,et al.  Single-mismatch detection using gold-quenched fluorescent oligonucleotides , 2001, Nature Biotechnology.

[16]  Sanjay Tyagi,et al.  Molecular Beacons: Probes that Fluoresce upon Hybridization , 1996, Nature Biotechnology.

[17]  R. Abramson,et al.  Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[18]  R. Schimke,et al.  Reduced-stringency DNA reassociation: sequence specific duplex formation. , 1982, Nucleic acids research.

[19]  W. S. Hummers,et al.  Preparation of Graphitic Oxide , 1958 .