Keep Your Fingers Off My DNA: Protein–Protein Interactions Mediated by C2H2 Zinc Finger Domains

Cys2-His2 (C2H2) zinc finger domains (ZFs) were originally identified as DNA-binding domains, and uncharacterized domains are typically assumed to function in DNA binding. However, a growing body of evidence suggests an important and widespread role for these domains in protein binding. There are even examples of zinc fingers that support both DNA and protein interactions, which can be found in well-known DNA-binding proteins such as Sp1, Zif268, and Ying Yang 1 (YY1). C2H2 protein–protein interactions (PPIs) are proving to be more abundant than previously appreciated, more plastic than their DNA-binding counterparts, and more variable and complex in their interactions surfaces. Here we review the current knowledge of over 100 C2H2 zinc finger-mediated PPIs, focusing on what is known about the binding surface, contributions of individual fingers to the interaction, and function. An accurate understanding of zinc finger biology will likely require greater insights into the potential protein interaction capabilities of C2H2 ZFs.

[1]  J. Wang,et al.  Functional interactions between YY1 and adenovirus E1A. , 1995, Nucleic acids research.

[2]  P. Tiollais,et al.  The RARα-PLZF chimera associated with Acute Promyelocytic Leukemia has retained a sequence-specific DNA-binding domain , 1997, Oncogene.

[3]  C. Heldin,et al.  Nuclear Factor YY1 Inhibits Transforming Growth Factor β- and Bone Morphogenetic Protein-Induced Cell Differentiation , 2003, Molecular and Cellular Biology.

[4]  A. Travers,et al.  Sequence-specific DNA binding by a two zinc-finger peptide from the Drosophila melanogaster Tramtrack protein. , 1992, Journal of molecular biology.

[5]  S. Ishii,et al.  Putative metal finger structure of the human immunodeficiency virus type 1 enhancer binding protein HIV-EP1. , 1989, The Journal of biological chemistry.

[6]  W. Yung,et al.  Regulation of Akt/PKB activity, cellular growth, and apoptosis in prostate carcinoma cells by MMAC/PTEN. , 1999, Cancer research.

[7]  A. Mammoto,et al.  Proteolytic release of the carboxy-terminal fragment of proHB-EGF causes nuclear export of PLZF , 2003, The Journal of cell biology.

[8]  A Klug,et al.  Repetitive zinc‐binding domains in the protein transcription factor IIIA from Xenopus oocytes. , 1985, The EMBO journal.

[9]  S. Li,et al.  Structure of the ubiquitin‐binding zinc finger domain of human DNA Y‐polymerase η , 2007, EMBO reports.

[10]  R. F. Ryan,et al.  The role of zinc finger linkers in p43 and TFIIIA binding to 5S rRNA and DNA. , 1998, Nucleic acids research.

[11]  Carl O. Pabo,et al.  Drug discovery with engineered zinc-finger proteins , 2003, Nature Reviews Drug Discovery.

[12]  Dana Carroll,et al.  Gene targeting using zinc finger nucleases , 2005, Nature Biotechnology.

[13]  T. Hall,et al.  Multiple modes of RNA recognition by zinc finger proteins. , 2005, Current opinion in structural biology.

[14]  P. Quail,et al.  HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. , 2000, Genes & development.

[15]  R. Li,et al.  Sp1 acts as a repressor of the human adenine nucleotide translocase-2 (ANT2) promoter. , 2001, European journal of biochemistry.

[16]  TheIkaros GeneEncodes a Family ofFunctionally Diverse ZincFinger DNA-Binding Proteins , 1994 .

[17]  D. Schatz,et al.  A zinc-binding domain involved in the dimerization of RAG1. , 1996, Journal of molecular biology.

[18]  F. Rudt,et al.  Structural determinants in 5S RNA and TFIIIA for 7S RNP formation. , 1998, European journal of biochemistry.

[19]  T. Maniatis,et al.  A DNA-binding protein containing two widely separated zinc finger motifs that recognize the same DNA sequence. , 1990, Genes & development.

[20]  J. Mackay,et al.  Zinc fingers as protein recognition motifs: structural basis for the GATA-1/friend of GATA interaction. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[21]  J. Mackay,et al.  Solution structures of two CCHC zinc fingers from the FOG family protein U-shaped that mediate protein-protein interactions. , 2000, Structure.

[22]  N. Perkins,et al.  Inhibition of the RelA(p65) NF-kappaB subunit by Egr-1. , 2000, The Journal of biological chemistry.

[23]  I. Weissman,et al.  Helios, a T cell-restricted Ikaros family member that quantitatively associates with Ikaros at centromeric heterochromatin. , 1998, Genes & development.

[24]  K. Yokoro,et al.  ZF5, which is a Kruppel-type transcriptional repressor, requires the zinc finger domain for self-association. , 1999, Biochemical and biophysical research communications.

[25]  H. Kiyosawa,et al.  Eos: a novel member of the Ikaros gene family expressed predominantly in the developing nervous system , 1999, FEBS letters.

[26]  J. Pelletier,et al.  Inhibition of Wilms Tumor 1 Transactivation by Bone Marrow Zinc Finger 2, a Novel Transcriptional Repressor* , 2002, The Journal of Biological Chemistry.

[27]  T. Barz,et al.  Multitasking C2H2 Zinc Fingers Link Zac DNA Binding to Coordinated Regulation of p300-Histone Acetyltransferase Activity , 2006, Molecular and Cellular Biology.

[28]  J. Licht,et al.  ETO protein of t(8;21) AML is a corepressor for Bcl-6 B-cell lymphoma oncoprotein. , 2004, Blood.

[29]  J. Laity,et al.  Solution structure of a Zap1 zinc-responsive domain provides insights into metalloregulatory transcriptional repression in Saccharomyces cerevisiae. , 2006, Journal of molecular biology.

[30]  Youngsook Lee,et al.  Characterization of zinc finger protein 496 that interacts with Jumonji/Jarid2 , 2007, FEBS letters.

[31]  Toby J. Gibson,et al.  Base sequence discrimination by zinc-finger DNA-binding domains , 1991, Nature.

[32]  H. Samuels,et al.  NRC-Interacting Factor 1 Is a Novel Cotransducer That Interacts with and Regulates the Activity of the Nuclear Hormone Receptor Coactivator NRC , 2002, Molecular and Cellular Biology.

[33]  A. Kimura,et al.  Regulation of interaction of the acetyltransferase region of p300 and the DNA‐binding domain of Sp1 on and through DNA binding , 2000, Genes to cells : devoted to molecular & cellular mechanisms.

[34]  H Rotheneder,et al.  Transcription factors of the Sp1 family: interaction with E2F and regulation of the murine thymidine kinase promoter. , 1999, Journal of molecular biology.

[35]  F. Apiou,et al.  hZAC encodes a zinc finger protein with antiproliferative properties and maps to a chromosomal region frequently lost in cancer. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[36]  K. Chakraborty,et al.  Purification and Biochemical Characterization , 2008 .

[37]  K. Basso,et al.  BCL6 interacts with the transcription factor Miz-1 to suppress the cyclin-dependent kinase inhibitor p21 and cell cycle arrest in germinal center B cells , 2005, Nature Immunology.

[38]  K. Johansen,et al.  A Developmentally Regulated Splice Variant from the Complexlola Locus Encoding Multiple Different Zinc Finger Domain Proteins Interacts with the Chromosomal Kinase JIL-1* , 2003, The Journal of Biological Chemistry.

[39]  A. Gartel,et al.  Myc represses the p21(WAF1/CIP1) promoter and interacts with Sp1/Sp3 , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[40]  W. Friesen,et al.  Phage Display of RNA Binding Zinc Fingers from Transcription Factor IIIA* , 1997, The Journal of Biological Chemistry.

[41]  D. A. Engel,et al.  Transcriptional repression of the c-fos gene by YY1 is mediated by a direct interaction with ATF/CREB , 1995, Journal of virology.

[42]  J. Fontes,et al.  The zinc finger proteins ZXDA and ZXDC form a complex that binds CIITA and regulates MHC II gene transcription. , 2007, Journal of molecular biology.

[43]  N. Little,et al.  Identification of WTAP, a novel Wilms' tumour 1-associating protein. , 2000, Human molecular genetics.

[44]  M. Crossley,et al.  Eos and Pegasus, Two Members of the Ikaros Family of Proteins with Distinct DNA Binding Activities* , 2000, The Journal of Biological Chemistry.

[45]  Jeannie T. Lee,et al.  Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch. , 2007, Molecular cell.

[46]  N. Perkins,et al.  Inhibition of the RelA(p65) NF-κB Subunit by Egr-1* , 2000, The Journal of Biological Chemistry.

[47]  L. Rohrschneider,et al.  Fiz1, a Novel Zinc Finger Protein Interacting with the Receptor Tyrosine Kinase Flt3* , 1999, The Journal of Biological Chemistry.

[48]  K. Mikoshiba,et al.  Physical and Functional Interactions between Zic and Gli Proteins* , 2001, The Journal of Biological Chemistry.

[49]  Ryan T. Phan,et al.  The BCL6 proto-oncogene suppresses p53 expression in germinal-centre B cells , 2004, Nature.

[50]  P. Tiollais,et al.  The RAR alpha-PLZF chimera associated with Acute Promyelocytic Leukemia has retained a sequence-specific DNA-binding domain. , 1997, Oncogene.

[51]  B. Morgan,et al.  Aiolos, a lymphoid restricted transcription factor that interacts with Ikaros to regulate lymphocyte differentiation , 1997, The EMBO journal.

[52]  D. Darling,et al.  Combination of a Zinc Finger and Homeodomain Required for Protein-Interaction , 2003, Molecular Biology Reports.

[53]  N. Shimizu,et al.  Novel human BTB/POZ domain-containing zinc finger protein ZNF295 is directly associated with ZFP161. , 2005, Biochemical and biophysical research communications.

[54]  J. Mackay,et al.  The C-terminal Domain of Eos Forms a High Order Complex in Solution* , 2003, Journal of Biological Chemistry.

[55]  R. Chanet,et al.  Protein interaction mapping: a Drosophila case study. , 2005, Genome research.

[56]  S. Tsuzuki,et al.  Interactions of GATA-2 with the promyelocytic leukemia zinc finger (PLZF) protein, its homologue FAZF, and the t(11;17)-generated PLZF-retinoic acid receptor alpha oncoprotein. , 2002, Blood.

[57]  M. Leid,et al.  COUP-TF (chicken ovalbumin upstream promoter transcription factor)-interacting protein 1 (CTIP1) is a sequence-specific DNA binding protein. , 2002, The Biochemical journal.

[58]  R. Hay,et al.  Interaction of enhancer-binding protein EBP1 (NF-kappa B) with the human immunodeficiency virus type 1 enhancer , 1990, Journal of virology.

[59]  J. Visvader,et al.  A Classic Zinc Finger from Friend of GATA Mediates an Interaction with the Coiled-coil of Transforming Acidic Coiled-coil 3* , 2004, Journal of Biological Chemistry.

[60]  T. Collins,et al.  The SCAN domain defines a large family of zinc finger transcription factors. , 2003, Gene.

[61]  D. Case,et al.  Induced fit and "lock and key" recognition of 5S RNA by zinc fingers of transcription factor IIIA. , 2006, Journal of molecular biology.

[62]  D. Dorfman,et al.  Identification of a novel gene, DZIP (DAZ-interacting protein), that encodes a protein that interacts with DAZ (deleted in azoospermia) and is expressed in embryonic stem cells and germ cells. , 2004, Genomics.

[63]  P E Wright,et al.  Three-dimensional solution structure of a single zinc finger DNA-binding domain. , 1989, Science.

[64]  D. C. Dias,et al.  Definition of Minimal Domains of Interaction Within the Recombination-Activating Genes 1 and 2 Recombinase Complex1 , 2000, The Journal of Immunology.

[65]  H. Grimes,et al.  Gfi‐1 attaches to the nuclear matrix, associates with ETO (MTG8) and histone deacetylase proteins, and represses transcription using a TSA‐sensitive mechanism , 2003, Journal of cellular biochemistry.

[66]  S. Khochbin,et al.  Class II Histone Deacetylases Are Directly Recruited by BCL6 Transcriptional Repressor* , 2002, The Journal of Biological Chemistry.

[67]  E. Seto,et al.  Unlocking the mechanisms of transcription factor YY1: are chromatin modifying enzymes the key? , 1999, Gene.

[68]  J. Wojcik,et al.  Functional proteomics mapping of a human signaling pathway. , 2004, Genome research.

[69]  A M Gronenborn,et al.  High-resolution solution structure of the double Cys2His2 zinc finger from the human enhancer binding protein MBP-1. , 1992, Biochemistry.

[70]  E. Morii,et al.  Interaction and Cooperation of mi Transcription Factor (MITF) and Myc-associated Zinc-finger Protein-related Factor (MAZR) for Transcription of Mouse Mast Cell Protease 6 Gene* , 2002, The Journal of Biological Chemistry.

[71]  K. Umesono,et al.  Chromosomal translocation t(15;17) in human acute promyelocytic leukemia fuses RARα with a novel putative transcription factor, PML , 1991, Cell.

[72]  R. Y. Tsai,et al.  Identification of DNA Recognition Sequences and Protein Interaction Domains of the Multiple-Zn-Finger Protein Roaz , 1998, Molecular and Cellular Biology.

[73]  He Li,et al.  Interaction of Huntington Disease Protein with Transcriptional Activator Sp1 , 2002, Molecular and Cellular Biology.

[74]  H. Pelham,et al.  A specific transcription factor that can bind either the 5S RNA gene or 5S RNA. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[75]  R. C. Rodríguez de la Vega,et al.  Novel interactions between K+ channels and scorpion toxins. , 2003, Trends in pharmacological sciences.

[76]  H. Bellen,et al.  Senseless physically interacts with proneural proteins and functions as a transcriptional co-activator , 2006, Development.

[77]  R. Tjian,et al.  Purification and biochemical characterization of the promoter-specific transcription factor, Sp1. , 1986, Science.

[78]  Nicole Rusk Getting a grip on RNA , 2007, Nature Methods.

[79]  Thomas Shenk,et al.  Interaction between transcription factors Spl and YY1 , 1993, Nature.

[80]  Robert Tjian,et al.  Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain , 1987, Cell.

[81]  E. Wintersberger,et al.  Interaction of Sp1 with the growth- and cell cycle-regulated transcription factor E2F , 1996, Molecular and cellular biology.

[82]  O. Albagli,et al.  Point mutations in BCL6 DNA-binding domain reveal distinct roles for the six zinc fingers. , 2003, Biochemical and biophysical research communications.

[83]  Aaron Klug,et al.  Crystal structure of a zinc-finger–RNA complex reveals two modes of molecular recognition , 2003, Nature.

[84]  Ingmar Reuter,et al.  Integr8 and Genome Reviews: integrated views of complete genomes and proteomes , 2004, Nucleic Acids Res..

[85]  R. W. Leggett,et al.  Casein Kinase II-mediated Phosphorylation of the C Terminus of Sp1 Decreases Its DNA Binding Activity* , 1997, The Journal of Biological Chemistry.

[86]  D. Segal,et al.  Direct detection of double-stranded DNA: Molecular methods and applications for DNA diagnostics. , 2006, Molecular bioSystems.

[87]  M. Horikoshi,et al.  Functional Interaction of the DNA-binding Transcription Factor Sp1 through Its DNA-binding Domain with the Histone Chaperone TAF-I* , 2003, Journal of Biological Chemistry.

[88]  N. Jullian,et al.  Determination of the structure of the nucleocapsid protein NCp7 from the human immunodeficiency virus type 1 by 1H NMR. , 1992, The EMBO journal.

[89]  D. Lambright,et al.  Determinants of Rab5 Interaction with the N Terminus of Early Endosome Antigen 1* , 2003, The Journal of Biological Chemistry.

[90]  J. Joung,et al.  Synthetic protein–protein interaction domains created by shuffling Cys2His2 zinc-fingers , 2006, Molecular systems biology.

[91]  K. Georgopoulos,et al.  Zinc finger‐mediated protein interactions modulate Ikaros activity, a molecular control of lymphocyte development. , 1996, The EMBO journal.

[92]  C. Pabo,et al.  Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers. , 1993, Science.

[93]  野尻 俊輔 ATBF1 enhances the suppression of STAT3 signaling by interaction with PIAS3 , 2004 .

[94]  L. Hood,et al.  Zinc-dependent structure of a single-finger domain of yeast ADR1. , 1988, Science.

[95]  E. Jennings,et al.  DNA binding sites for the transcriptional activator/repressor YY1. , 1995, Nucleic acids research.

[96]  M. Leid,et al.  Isolation of a Novel Family of C2H2 Zinc Finger Proteins Implicated in Transcriptional Repression Mediated by Chicken Ovalbumin Upstream Promoter Transcription Factor (COUP-TF) Orphan Nuclear Receptors* , 2000, The Journal of Biological Chemistry.

[97]  J. Mackay,et al.  Pentaprobe: a comprehensive sequence for the one-step detection of DNA-binding activities. , 2003, Nucleic acids research.

[98]  J. Mackay,et al.  Zinc fingers are sticking together. , 1998, Trends in biochemical sciences.

[99]  Christine Chomienne,et al.  The PML-RARα fusion mRNA generated by the t(15;17) translocation in acute promyelocytic leukemia encodes a functionally altered RAR , 1991, Cell.

[100]  G. Nucifora,et al.  Point Mutations in Two EVI1 Zn Fingers Abolish EVI1-GATA1 Interaction and Allow Erythroid Differentiation of Murine Bone Marrow Cells , 2006, Molecular and Cellular Biology.

[101]  D. Kim,et al.  Amino Acid Residues in RAG1 Responsible for the Interaction with RAG2 during the V(D)J Recombination Process* , 2004, Journal of Biological Chemistry.

[102]  J. Mackay,et al.  Transcriptional cofactors of the FOG family interact with GATA proteins by means of multiple zinc fingers , 1999, The EMBO journal.

[103]  Raymond S Brown,et al.  Zinc finger proteins: getting a grip on RNA. , 2005, Current opinion in structural biology.

[104]  R. Kingston,et al.  Functional selectivity of recombinant mammalian SWI/SNF subunits. , 2000, Genes & development.

[105]  H. Dyson,et al.  DNA-induced α-helix capping in conserved linker sequences is a determinant of binding affinity in Cys2-His2 zinc fingers , 2000 .

[106]  M. Beato,et al.  Members of the Sp Transcription Factor Family Control Transcription from the Uteroglobin Promoter (*) , 1995, The Journal of Biological Chemistry.

[107]  J. Merchant,et al.  ZBP-89 Promotes Growth Arrest through Stabilization of p53 , 2001, Molecular and Cellular Biology.

[108]  J. Mackay,et al.  A class of zinc fingers involved in protein-protein interactions biophysical characterization of CCHC fingers from fog and U-shaped. , 2000, European journal of biochemistry.

[109]  P E Wright,et al.  DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers. , 2000, Journal of molecular biology.

[110]  B. Jeon,et al.  Transcriptional Activity of Sp1 Is Regulated by Molecular Interactions between the Zinc Finger DNA Binding Domain and the Inhibitory Domain with Corepressors, and This Interaction Is Modulated by MEK* , 2005, Journal of Biological Chemistry.

[111]  D. Moerman,et al.  Caenorhabditis elegans UNC-98, a C2H2 Zn finger protein, is a novel partner of UNC-97/PINCH in muscle adhesion complexes. , 2003, Molecular biology of the cell.

[112]  Kaoru Suzuki,et al.  Negative Regulatory Role of Sp1 in Metal Responsive Element-mediated Transcriptional Activation* , 2001, The Journal of Biological Chemistry.

[113]  M. Beato,et al.  Sp1‐mediated transcriptional activation is repressed by Sp3. , 1994, The EMBO journal.

[114]  Alexander L. Dent,et al.  Repression of AP-1 Function: A Mechanism for the Regulation of Blimp-1 Expression and B Lymphocyte Differentiation by the B Cell Lymphoma-6 Protooncogene1 , 2002, The Journal of Immunology.

[115]  H. Edenberg,et al.  Sp3 and Sp4 Can Repress Transcription by Competing with Sp1 for the Core cis-Elements on the Human ADH5/FDHMinimal Promoter* , 1999, The Journal of Biological Chemistry.

[116]  Ash A. Alizadeh,et al.  Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. , 2004, The New England journal of medicine.

[117]  A. Ullrich,et al.  EGF receptor transactivation by G-protein-coupled receptors requires metalloproteinase cleavage of proHB-EGF , 1999, Nature.

[118]  J. Massagué,et al.  Carboxy-terminally truncated Gli3 proteins associate with Smads , 1998, Nature Genetics.

[119]  B. Seetharam,et al.  Characterization of the Human Transcobalamin II Promoter , 1998, The Journal of Biological Chemistry.

[120]  David J. Chen,et al.  ZIC2-dependent Transcriptional Regulation Is Mediated by DNA-dependent Protein Kinase, Poly(ADP-ribose) Polymerase, and RNA Helicase A* , 2007, Journal of Biological Chemistry.

[121]  Bernhard Lüscher,et al.  Characterization of the Transcriptional Regulator YY1 , 1997, The Journal of Biological Chemistry.

[122]  D. Haber,et al.  Wilms tumor and the WT1 gene. , 2001, Experimental cell research.

[123]  J. Massagué,et al.  OAZ Uses Distinct DNA- and Protein-Binding Zinc Fingers in Separate BMP-Smad and Olf Signaling Pathways , 2000, Cell.

[124]  R. Hennekam,et al.  Mutations in a new gene, encoding a zinc-finger protein, cause tricho-rhino-phalangeal syndrome type I , 2000, Nature Genetics.

[125]  Joseph E. Coleman,et al.  Crystal structure of the RAG1 dimerization domain reveals multiple zinc-binding motifs including a novel zinc binuclear cluster , 1997, Nature Structural Biology.

[126]  M. Anderson,et al.  CoREST: a functional corepressor required for regulation of neural-specific gene expression. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[127]  Jeng-Shin Lee,et al.  Everything you have ever wanted to know about Yin Yang 1...... , 1997, Biochimica et biophysica acta.

[128]  S K Burley,et al.  Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[129]  David J. Segal,et al.  The Protein-Binding Potential of C2H2 Zinc Finger Domains , 2008, Cell Biochemistry and Biophysics.

[130]  J. Bockaert,et al.  Regulation of apoptosis and cell cycle arrest by Zac1, a novel zinc finger protein expressed in the pituitary gland and the brain , 1997, The EMBO journal.

[131]  A. Hata,et al.  Early hematopoietic zinc finger protein (EHZF), the human homolog to mouse Evi3, is highly expressed in primitive human hematopoietic cells. , 2004, Blood.

[132]  M. Beato,et al.  Functional Analyses of the Transcription Factor Sp4 Reveal Properties Distinct from Sp1 and Sp3 (*) , 1995, The Journal of Biological Chemistry.

[133]  M. Simon,et al.  The Transcriptional Repressor GFI-1 Antagonizes PU.1 Activity through Protein-Protein Interaction* , 2007, Journal of Biological Chemistry.

[134]  D. Aunis,et al.  Recruitment of Tat to Heterochromatin Protein HP1 via Interaction with CTIP2 Inhibits Human Immunodeficiency Virus Type 1 Replication in Microglial Cells , 2003, Journal of Virology.

[135]  M. Poncz,et al.  An Sp1-binding Silencer Element Is a Critical Negative Regulator of the Megakaryocyte-specific αIIb Gene* , 1998, The Journal of Biological Chemistry.

[136]  B. Morgan,et al.  Helios, a novel dimerization partner of Ikaros expressed in the earliest hematopoietic progenitors , 1998, Current Biology.

[137]  S. Desiderio,et al.  RAG-2 Promotes Heptamer Occupancy by RAG-1 in the Assembly of a V(D)J Initiation Complex , 1999, Molecular and Cellular Biology.

[138]  T. Möröy,et al.  Identification of a Novel Krüppel-associated Box Domain Protein, Krim-1, That Interacts with c-Myc and Inhibits Its Oncogenic Activity* , 2003, Journal of Biological Chemistry.

[139]  L. Raftery,et al.  The zinc finger protein schnurri acts as a Smad partner in mediating the transcriptional response to decapentaplegic. , 2000, Developmental biology.

[140]  D. Boucher,et al.  The negative regulator of Gli, Suppressor of fused (Sufu), interacts with SAP18, Galectin3 and other nuclear proteins. , 2004, The Biochemical journal.

[141]  M. Schmid,et al.  Colocalization and heteromerization between the two human oncogene POZ/zinc finger proteins, LAZ3 (BCL6) and PLZF , 2000, Oncogene.

[142]  N. Hastie,et al.  hnRNP-U directly interacts with WT1 and modulates WT1 transcriptional activation , 2007, Oncogene.

[143]  J. Berg,et al.  Metal-dependent folding of a single zinc finger from transcription factor IIIA. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[144]  A. Vincent,et al.  Two types of zinc fingers are required for dimerization of the serendipity delta transcriptional activator , 1997, Molecular and cellular biology.

[145]  C. Pabo,et al.  DNA recognition by Cys2His2 zinc finger proteins. , 2000, Annual review of biophysics and biomolecular structure.

[146]  Young Do Kwon,et al.  Human zinc fingers as building blocks in the construction of artificial transcription factors , 2003, Nature Biotechnology.

[147]  S. Orkin,et al.  FOG, a Multitype Zinc Finger Protein, Acts as a Cofactor for Transcription Factor GATA-1 in Erythroid and Megakaryocytic Differentiation , 1997, Cell.

[148]  Wen-Hwa Lee,et al.  Functional Dissection of Transcription Factor ZBRK1 Reveals Zinc Fingers with Dual Roles in DNA-binding and BRCA1-dependent Transcriptional Repression* , 2004, Journal of Biological Chemistry.

[149]  F. Morlé,et al.  Functional Cross-Antagonism between Transcription Factors FLI-1 and EKLF , 2003, Molecular and Cellular Biology.

[150]  P. Lefebvre,et al.  PLZF is a negative regulator of retinoic acid receptor transcriptional activity , 2003, Nuclear receptor.

[151]  R. Y. Tsai,et al.  Cloning and Functional Characterization of Roaz, a Zinc Finger Protein that Interacts with O/E-1 to Regulate Gene Expression: Implications for Olfactory Neuronal Development , 1997, The Journal of Neuroscience.

[152]  D. Moerman,et al.  UNC-97 / PINCH in muscle adhesion complexes , 2003 .

[153]  S. Del Río,et al.  The role of zinc fingers in transcriptional activation by transcription factor IIIA. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[154]  P. Pandolfi,et al.  The acute promyelocytic leukemia-associated protein, promyelocytic leukemia zinc finger, regulates 1,25-dihydroxyvitamin D(3)-induced monocytic differentiation of U937 cells through a physical interaction with vitamin D(3) receptor. , 2001, Blood.

[155]  D J Segal,et al.  Custom DNA-binding proteins come of age: polydactyl zinc-finger proteins. , 2001, Current opinion in biotechnology.

[156]  Yeast two-hybrid cloning of a novel zinc finger protein that interacts with the multifunctional transcription factor YY1. , 1997, Nucleic acids research.

[157]  C. Cerni,et al.  YY1 can inhibit c-Myc function through a mechanism requiring DNA binding of YY1 but neither its transactivation domain nor direct interaction with c-Myc , 1998, Oncogene.

[158]  E. Seto,et al.  Adenovirus E1A proteins interact with the cellular YY1 transcription factor , 1995, Journal of virology.

[159]  H. G. Kim,et al.  Negative regulation of Sp1 trans-activation is correlated with the binding of cellular proteins to the amino terminus of the Sp1 trans-activation domain. , 1994, The Journal of biological chemistry.

[160]  F. Holsboer,et al.  Transcriptional Activities of the Zinc Finger Protein Zac Are Differentially Controlled by DNA Binding , 2003, Molecular and Cellular Biology.

[161]  D. Eisenberg,et al.  Selective dimerization of a C2H2 zinc finger subfamily. , 2003, Molecular cell.

[162]  Ken Murata,et al.  Functional Interaction between Coactivators CBP/p300, PCAF, and Transcription Factor FKLF2* , 2002, The Journal of Biological Chemistry.

[163]  A. Lamond,et al.  WT1 interacts with the splicing factor U2AF65 in an isoform-dependent manner and can be incorporated into spliceosomes. , 1998, Genes & development.

[164]  Victor V Lobanenkov,et al.  Physical and Functional Interaction between Two Pluripotent Proteins, the Y-box DNA/RNA-binding Factor, YB-1, and the Multivalent Zinc Finger Factor, CTCF* , 2000, The Journal of Biological Chemistry.

[165]  P. Sharp,et al.  A large protein containing zinc finger domains binds to related sequence elements in the enhancers of the class I major histocompatibility complex and kappa immunoglobulin genes , 1990, Molecular and cellular biology.

[166]  N. Pavletich,et al.  Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A , 1991, Science.

[167]  Jeng-Shin Lee,et al.  Evidence for physical interaction between the zinc-finger transcription factors YY1 and Sp1. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[168]  R S Chaganti,et al.  BCL-6, a POZ/zinc-finger protein, is a sequence-specific transcriptional repressor. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[169]  Robert D. Finn,et al.  New developments in the InterPro database , 2007, Nucleic Acids Res..

[170]  M. Belfort,et al.  Zinc finger as distance determinant in the flexible linker of intron endonuclease I-TevI , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[171]  J. Matthews,et al.  Zinc Fingers‐‐Folds for Many Occasions , 2002, IUBMB life.