CMC: A consensus multi-view clustering model for predicting Alzheimer's disease progression

Machine learning has been used in the past for the auxiliary diagnosis of Alzheimer's Disease (AD). However, most existing technologies only explore single-view data, require manual parameter setting and focus on two-class (i.e., dementia or not) classification problems. Unlike single-view data, multi-view data provide more powerful feature representation capability. Learning with multi-view data is referred to as multi-view learning, which has received certain attention in recent years. In this paper, we propose a new multi-view clustering model called Consensus Multi-view Clustering (CMC) based on nonnegative matrix factorization for predicting the multiple stages of AD progression. The proposed CMC performs multi-view learning idea to fully capture data features with limited medical images, approaches similarity relations between different entities, addresses the shortcoming from multi-view fusion that requires manual setting parameters, and further acquires a consensus representation containing shared features and complementary knowledge of multiple view data. It not only can improve the predication performance of AD, but also can screen and classify the symptoms of different AD's phases. Experimental results using data with twelve views constructed by brain Magnetic Resonance Imaging (MRI) database from Alzheimer's Disease Neuroimaging Initiative expound and prove the effectiveness of the proposed model.

[1]  Hong Cheng,et al.  TATC: Predicting Alzheimer's Disease with Actigraphy Data , 2018, KDD.

[2]  H. Sebastian Seung,et al.  Algorithms for Non-negative Matrix Factorization , 2000, NIPS.

[3]  Heung-Il Suk,et al.  Toward an interpretable Alzheimer’s disease diagnostic model with regional abnormality representation via deep learning , 2019, NeuroImage.

[4]  Nir Lipsman,et al.  Blood–brain barrier opening in Alzheimer’s disease using MR-guided focused ultrasound , 2018, Nature Communications.

[5]  Eiichi Watanabe,et al.  Analysis of multiscale entropy characteristics of heart rate variability in patients with permanent atrial fibrillation for predicting ischemic stroke risk , 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

[6]  Kathryn Ziegler-Graham,et al.  Forecasting the global burden of Alzheimer’s disease , 2007, Alzheimer's & Dementia.

[7]  D. Harman,et al.  Alzheimer's Disease Pathogenesis , 2006, Annals of the New York Academy of Sciences.

[8]  Hao Wang,et al.  GMC: Graph-Based Multi-View Clustering , 2020, IEEE Transactions on Knowledge and Data Engineering.

[9]  Raymond Chiong,et al.  Deep learning to detect Alzheimer's disease from neuroimaging: A systematic literature review , 2019, Comput. Methods Programs Biomed..

[10]  Rui Li,et al.  Multi-modal discriminative dictionary learning for Alzheimer's disease and mild cognitive impairment , 2017, Comput. Methods Programs Biomed..

[11]  Chris H. Q. Ding,et al.  Nonnegative Matrix Factorizations for Clustering: A Survey , 2018, Data Clustering: Algorithms and Applications.

[12]  J. Morris,et al.  Recent publications from the Alzheimer's Disease Neuroimaging Initiative: Reviewing progress toward improved AD clinical trials , 2017, Alzheimer's & Dementia.

[13]  Adrian Basarab,et al.  On the early diagnosis of Alzheimer's Disease from multimodal signals: A survey , 2016, Artif. Intell. Medicine.

[14]  Delbert Dueck,et al.  Clustering by Passing Messages Between Data Points , 2007, Science.

[15]  Yan Liu,et al.  Region-of-Interest based sparse feature learning method for Alzheimer's disease identification , 2019, Comput. Methods Programs Biomed..

[16]  Manhua Liu,et al.  A multi-model deep convolutional neural network for automatic hippocampus segmentation and classification in Alzheimer’s disease , 2019, NeuroImage.

[17]  MengChu Zhou,et al.  An Efficient Non-Negative Matrix-Factorization-Based Approach to Collaborative Filtering for Recommender Systems , 2014, IEEE Transactions on Industrial Informatics.

[18]  Xiaohui Yao,et al.  Multi-modal neuroimaging feature selection with consistent metric constraint for diagnosis of Alzheimer's disease , 2019, Medical Image Anal..

[19]  Qi Zhu,et al.  Discriminative margin-sensitive autoencoder for collective multi-view disease analysis , 2019, Neural Networks.

[20]  Liang Chen,et al.  Multi-modal classification of Alzheimer's disease using nonlinear graph fusion , 2017, Pattern Recognit..

[21]  Pei-Yu Chen,et al.  In Vivo Visualization of Brain Vasculature in Alzheimer's Disease Mice by High-Frequency Micro-Doppler Imaging , 2019, IEEE Transactions on Biomedical Engineering.

[22]  Feiping Nie,et al.  Proceedings of the Twenty-Third International Joint Conference on Artificial Intelligence Multi-View K-Means Clustering on Big Data , 2022 .

[23]  V. Finder Alzheimer's disease: a general introduction and pathomechanism. , 2010, Journal of Alzheimer's disease : JAD.

[24]  Giovanni Felici,et al.  A novel method and software for automatically classifying Alzheimer's disease patients by magnetic resonance imaging analysis , 2017, Comput. Methods Programs Biomed..

[25]  Feiping Nie,et al.  Robust Manifold Nonnegative Matrix Factorization , 2014, ACM Trans. Knowl. Discov. Data.

[26]  Hao Wang,et al.  Multi-view Clustering via Concept Factorization with Local Manifold Regularization , 2016, 2016 IEEE 16th International Conference on Data Mining (ICDM).

[27]  Wai Keung Wong,et al.  Differential evolution-based optimal Gabor filter model for fabric inspection , 2016, Neurocomputing.

[28]  Lan Luo,et al.  Detection and Prediction of Ovulation From Body Temperature Measured by an In-Ear Wearable Thermometer , 2020, IEEE Transactions on Biomedical Engineering.

[29]  Zheng Zhang,et al.  Generalized Incomplete Multiview Clustering With Flexible Locality Structure Diffusion , 2020, IEEE Transactions on Cybernetics.

[30]  Ling Shao,et al.  Binary Multi-View Clustering , 2019, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[31]  Dinggang Shen,et al.  Medical Image Synthesis with Deep Convolutional Adversarial Networks , 2018, IEEE Transactions on Biomedical Engineering.

[32]  for the Alzheimer's Disease Neuroimaging Initiative,et al.  A Novel Texture Extraction Technique with T1 Weighted MRI for the Classification of Alzheimer’s Disease , 2019, Journal of Neuroscience Methods.

[33]  R. Swerdlow,et al.  Pathogenesis of Alzheimer’s disease , 2007, Clinical interventions in aging.

[34]  Ujjwal Maulik,et al.  Performance Evaluation of Some Clustering Algorithms and Validity Indices , 2002, IEEE Trans. Pattern Anal. Mach. Intell..

[35]  J. Hogg Magnetic resonance imaging. , 1994, Journal of the Royal Naval Medical Service.

[36]  Wei Li,et al.  Detecting Alzheimer's disease Based on 4D fMRI: An exploration under deep learning framework , 2020, Neurocomputing.

[37]  Yongdong Zhang,et al.  Multiview Spectral Embedding , 2010, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[38]  Sanjeev Arora,et al.  Computing a nonnegative matrix factorization -- provably , 2011, STOC '12.

[39]  Qiao Liu,et al.  VariFunNet, an integrated multiscale modeling framework to study the effects of rare non-coding variants in genome-wide association studies: Applied to Alzheimer's disease , 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

[40]  Xuelong Li,et al.  GA-SIFT: A new scale invariant feature transform for multispectral image using geometric algebra , 2014, Inf. Sci..

[41]  Hao Wang,et al.  Multi-view clustering: A survey , 2018, Big Data Min. Anal..

[42]  Yaozong Gao,et al.  Longitudinal clinical score prediction in Alzheimer's disease with soft-split sparse regression based random forest , 2016, Neurobiology of Aging.

[43]  Adrien Bartoli,et al.  KAZE Features , 2012, ECCV.

[44]  Fan Zhang,et al.  Multi-modal deep learning model for auxiliary diagnosis of Alzheimer's disease , 2019, Neurocomputing.

[45]  Mohamed Nadif,et al.  A Way to Boost Semi-NMF for Document Clustering , 2017, CIKM.

[46]  D. Modenini,et al.  Attitude Determination from Ellipsoid Observations: A Modified Orthogonal Procrustes Problem , 2018, Journal of Guidance, Control, and Dynamics.

[47]  Xuelong Li,et al.  Parameter-Free Auto-Weighted Multiple Graph Learning: A Framework for Multiview Clustering and Semi-Supervised Classification , 2016, IJCAI.

[48]  Lei Du,et al.  Robust Multi-View Spectral Clustering via Low-Rank and Sparse Decomposition , 2014, AAAI.

[49]  Xuelong Li,et al.  Multi-View Clustering and Semi-Supervised Classification with Adaptive Neighbours , 2017, AAAI.

[50]  Julien Wojak,et al.  Multiscale spatial gradient features for 18F-FDG PET image-guided diagnosis of Alzheimer's disease , 2019, Comput. Methods Programs Biomed..

[51]  Giovanni Felici,et al.  An integrated approach based on EEG signals processing combined with supervised methods to classify Alzheimer’s disease patients , 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

[52]  Hao Wang,et al.  Discovering Senile Dementia from Brain MRI Using Ra-DenseNet , 2019, PAKDD.

[53]  Stephen A. Vavasis,et al.  On the Complexity of Nonnegative Matrix Factorization , 2007, SIAM J. Optim..

[54]  Jiawei Han,et al.  Multi-View Clustering via Joint Nonnegative Matrix Factorization , 2013, SDM.

[55]  Geoffrey E. Hinton,et al.  Visualizing Data using t-SNE , 2008 .

[56]  Michael K. Ng,et al.  SNMFCA: Supervised NMF-Based Image Classification and Annotation , 2012, IEEE Transactions on Image Processing.

[57]  O. Forlenza,et al.  Early diagnosis and treatment of Alzheimer’s disease: new definitions and challenges , 2020, Revista brasileira de psiquiatria.

[58]  Douglas Steinley,et al.  K-means clustering: a half-century synthesis. , 2006, The British journal of mathematical and statistical psychology.

[59]  Han Zhang,et al.  A disease-related gene mining method based on weakly supervised learning model , 2018, BMC Bioinformatics.

[60]  Dinggang Shen,et al.  Multi-Layer Multi-View Classification for Alzheimer's Disease Diagnosis , 2018, AAAI.

[61]  Dinggang Shen,et al.  Strength and similarity guided group-level brain functional network construction for MCI diagnosis , 2019, Pattern Recognit..

[62]  Muhammad Tanveer,et al.  Least squares projection twin support vector clustering (LSPTSVC) , 2020, Inf. Sci..

[63]  Nils Gessert,et al.  Skin Lesion Classification Using CNNs With Patch-Based Attention and Diagnosis-Guided Loss Weighting , 2019, IEEE Transactions on Biomedical Engineering.

[64]  Xuelong Li,et al.  Structurally Incoherent Low-Rank Nonnegative Matrix Factorization for Image Classification , 2018, IEEE Transactions on Image Processing.