Spatial reconstruction of single-cell gene expression data
暂无分享,去创建一个
[1] C. Kimmel,et al. Origin and organization of the zebrafish fate map. , 1990, Development.
[2] J. Postlethwait,et al. Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos. , 1993, Development.
[3] R. Ho,et al. Commitment of cell fate in the early zebrafish embryo. , 1993, Science.
[4] D. Grunwald,et al. Lithium perturbation and goosecoid expression identify a dorsal specification pathway in the pregastrula zebrafish. , 1993, Development.
[5] C. Kimmel,et al. Stages of embryonic development of the zebrafish , 1995, Developmental dynamics : an official publication of the American Association of Anatomists.
[6] R. Tibshirani. Regression Shrinkage and Selection via the Lasso , 1996 .
[7] N. Hopkins,et al. Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells. , 1997, Development.
[8] Øyvind Drivenes,et al. Expression of two zebrafish homologues of the murine Six3 gene demarcates the initial eye primordia , 1998, Mechanisms of Development.
[9] M. Fürthauer,et al. Three different noggin genes antagonize the activity of bone morphogenetic proteins in the zebrafish embryo. , 1999, Developmental biology.
[10] I. Dawid,et al. Antagonistic role of vega1 and bozozok/dharma homeobox genes in organizer formation. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[11] C. Clarke,et al. A gene expression screen in zebrafish embryogenesis. , 2001, Genome research.
[12] D. Stainier,et al. casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish. , 2001, Genes & development.
[13] I. Seiliez,et al. Spatial and temporal expression of the zebrafish genome by large-scale in situ hybridization screening. , 2004, Methods in cell biology.
[14] G. Morvan-Dubois,et al. Skin development in bony fish with particular emphasis on collagen deposition in the dermis of the zebrafish (Danio rerio). , 2004, The International journal of developmental biology.
[15] L. Ramakrishnan,et al. Multiplex fluorescent in situ hybridization in zebrafish embryos using tyramide signal amplification. , 2005, Zebrafish.
[16] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[17] Alexander F Schier,et al. Molecular genetics of axis formation in zebrafish. , 2005, Annual review of genetics.
[18] A. Schier,et al. Nodal signaling activates differentiation genes during zebrafish gastrulation. , 2007, Developmental biology.
[19] D. Hunter,et al. mixtools: An R Package for Analyzing Mixture Models , 2009 .
[20] Raymond K. Auerbach,et al. Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project , 2010, Science.
[21] S. Linnarsson,et al. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. , 2011, Genome research.
[22] B. Graveley. The developmental transcriptome of Drosophila melanogaster , 2010, Nature.
[23] R. Sandberg,et al. Full-Length mRNA-Seq from single cell levels of RNA and individual circulating tumor cells , 2012, Nature Biotechnology.
[24] Michael F. Lin,et al. Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis. , 2012, Genome research.
[25] T. Hashimshony,et al. CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. , 2012, Cell reports.
[26] D. Sepich,et al. Gastrulation: making and shaping germ layers. , 2012, Annual review of cell and developmental biology.
[27] Stephen W. Wilson,et al. Breaking symmetry: The zebrafish as a model for understanding left‐right asymmetry in the developing brain , 2012, Developmental neurobiology.
[28] Peter A. Combs,et al. Sequencing mRNA from Cryo-Sliced Drosophila Embryos to Determine Genome-Wide Spatial Patterns of Gene Expression , 2013, PloS one.
[29] Aleksandra A. Kolodziejczyk,et al. Accounting for technical noise in single-cell RNA-seq experiments , 2013, Nature Methods.
[30] Stephen W. Wilson,et al. Full Transcriptome Analysis of Early Dorsoventral Patterning in Zebrafish , 2013, PloS one.
[31] Monte Westerfield,et al. ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics , 2012, Nucleic Acids Res..
[32] A. Schier. Genomics: Zebrafish earns its stripes , 2013, Nature.
[33] Andrew McDavid,et al. Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments , 2012, Bioinform..
[34] Rona S. Gertner,et al. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells , 2013, Nature.
[35] R. Sandberg,et al. Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells , 2014, Science.
[36] P. Kharchenko,et al. Bayesian approach to single-cell differential expression analysis , 2014, Nature Methods.
[37] George M. Church,et al. Highly Multiplexed Subcellular RNA Sequencing in Situ , 2014, Science.
[38] Cole Trapnell,et al. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells , 2014, Nature Biotechnology.
[39] I. Amit,et al. Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types , 2014, Science.
[40] A. Oudenaarden,et al. Validation of noise models for single-cell transcriptomics , 2014, Nature Methods.
[41] Jiao Ma,et al. Toddler: An Embryonic Signal That Promotes Cell Movement via Apelin Receptors , 2014, Science.
[42] D. Cacchiarelli,et al. Characterization of directed differentiation by high-throughput single-cell RNA-Seq , 2014, bioRxiv.
[43] N. Neff,et al. Reconstructing lineage hierarchies of the distal lung epithelium using single cell RNA-seq , 2014, Nature.
[44] Alex A. Pollen,et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex , 2014, Nature Biotechnology.
[45] Rona S. Gertner,et al. Single cell RNA Seq reveals dynamic paracrine control of cellular variation , 2014, Nature.
[46] A. Oudenaarden,et al. Genome-wide RNA Tomography in the Zebrafish Embryo , 2014, Cell.
[47] Assaf Gottlieb,et al. Reconstruction of the Mouse Otocyst and Early Neuroblast Lineage at Single-Cell Resolution , 2014, Cell.
[48] John D. Storey,et al. Statistical significance of variables driving systematic variation in high-dimensional data , 2013, Bioinform..
[49] J. Marioni,et al. High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin , 2015, Nature Biotechnology.