Structure and function of antifreeze proteins.

High-resolution three-dimensional structures are now available for four of seven non-homologous fish and insect antifreeze proteins (AFPs). For each of these structures, the ice-binding site of the AFP has been defined by site-directed mutagenesis, and ice etching has indicated that the ice surface is bound by the AFP. A comparison of these extremely diverse ice-binding proteins shows that they have the following attributes in common. The binding sites are relatively flat and engage a substantial proportion of the protein's surface area in ice binding. They are also somewhat hydrophobic -- more so than that portion of the protein exposed to the solvent. Surface-surface complementarity appears to be the key to tight binding in which the contribution of hydrogen bonding seems to be secondary to van der Waals contacts.

[1]  Donald E. Wohlschlag,et al.  Freezing Resistance in Some Antarctic Fishes , 1969, Science.

[2]  J. Duman,et al.  Antifreeze and ice nucleator proteins in terrestrial arthropods. , 2001, Annual review of physiology.

[3]  A. Clark,et al.  Inhibition of ice crystal growth by preferential peptide adsorption: a molecular modelling study , 1993 .

[4]  F. Sicheri,et al.  Ice-binding structure and mechanism of an antifreeze protein from winter flounder , 1995, Nature.

[5]  P. Lillford,et al.  A carrot leucine-rich-repeat protein that inhibits ice recrystallization. , 1998, Science.

[6]  J. Brady,et al.  Molecular dynamics simulations of a winter flounder “antifreeze” polypeptide in aqueous solution , 1993, Biopolymers.

[7]  J. Raymond,et al.  Adsorption inhibition as a mechanism of freezing resistance in polar fishes. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[8]  E. Driggers,et al.  Adsorption to ice of fish antifreeze glycopeptides 7 and 8. , 1993, Biophysical journal.

[9]  J. Madura,et al.  Analysis of shorthorn sculpin antifreeze protein stereospecific binding to (2-1 0) faces of ice. , 1996, Biophysical journal.

[10]  R. Hodges,et al.  New ice‐binding face for type I antifreeze protein , 1999, FEBS letters.

[11]  G. Scott,et al.  Fish Antifreeze Proteins: Recent Gene Evolution , 1986 .

[12]  R. Hodges,et al.  A diminished role for hydrogen bonds in antifreeze protein binding to ice. , 1997, Biochemistry.

[13]  R. Laursen,et al.  Artificial antifreeze polypeptides: α‐helical peptides with KAAK motifs have antifreeze and ice crystal morphology modifying properties , 1999, FEBS letters.

[14]  C. Knight,et al.  Adsorption of alpha-helical antifreeze peptides on specific ice crystal surface planes. , 1991, Biophysical journal.

[15]  R. Laursen,et al.  Structure-Function Relationships in a Type I Antifreeze Polypeptide , 1998, The Journal of Biological Chemistry.

[16]  J. Madura,et al.  Interactions of the D- and L-Forms of Winter Flounder Antifreeze Peptide with the {201} Planes of Ice , 1994 .

[17]  K. Merz,et al.  Ice-binding mechanism of winter flounder antifreeze proteins. , 1997, Biophysical journal.

[18]  Michael J. Kuiper,et al.  β-Helix structure and ice-binding properties of a hyperactive antifreeze protein from an insect , 2000, Nature.

[19]  A. Devries Antifreeze peptides and glycopeptides in cold-water fishes. , 1983, Annual review of physiology.

[20]  J. Baardsnes,et al.  Sialic acid synthase: the origin of fish type III antifreeze protein? , 2001, Trends in biochemical sciences.

[21]  C. Knight,et al.  Structure-function relationship in the antifreeze activity of synthetic alanine-lysine antifreeze polypeptides. , 2000, Biomacromolecules.

[22]  P. Wilson Explaining thermal hysteresis by the Kelvin effect , 1993 .

[23]  R. Laursen,et al.  A model for binding of an antifreeze polypeptide to ice. , 1992, Biophysical journal.

[24]  G. Scott,et al.  Fish Antifreeze Proteins: Recent Gene Evo , 1986 .

[25]  A. Devries,et al.  Chemical and physical properties of freezing point-depressing glycoproteins from Antarctic fishes. , 1970, The Journal of biological chemistry.

[26]  R. Hodges,et al.  Antifreeze protein from shorthorn sculpin: Identification of the ice‐binding surface , 2001, Protein science : a publication of the Protein Society.

[27]  P. Pudney,et al.  Phytochemistry: Heat-stable antifreeze protein from grass , 2000, Nature.

[28]  M. Griffith,et al.  Antifreeze Proteins in Winter Rye Are Similar to Pathogenesis-Related Proteins , 1995, Plant physiology.

[29]  Zongchao Jia,et al.  Mimicry of ice structure by surface hydroxyls and water of a β-helix antifreeze protein , 2000, Nature.

[30]  R. Laursen,et al.  Structure-function relationships in an antifreeze polypeptide. The role of neutral, polar amino acids. , 1992, The Journal of biological chemistry.

[31]  Y Yabusaki,et al.  Molecular dynamics simulation of winter flounder antifreeze protein variants in solution: correlation between side chain spacing and ice lattice. , 1993, Protein engineering.

[32]  A. Devries,et al.  Structure of a peptide antifreeze and mechanism of adsorption to ice. , 1977, Biochimica et biophysica acta.

[33]  B. Sykes,et al.  Refined solution structure of type III antifreeze protein: hydrophobic groups may be involved in the energetics of the protein-ice interaction. , 1996, Structure.

[34]  V. Ananthanarayanan,et al.  Structure-function relationships in a winter flounder antifreeze polypeptide. I. Stabilization of an alpha-helical antifreeze polypeptide by charged-group and hydrophobic interactions. , 1989, The Journal of biological chemistry.

[35]  C. Knight,et al.  Valine substituted winter flounder `antifreeze': preservation of ice growth hysteresis , 1998, FEBS letters.

[36]  C. Hew,et al.  Antifreeze proteins of teleost fishes. , 2001, Annual review of physiology.

[37]  K. Chou,et al.  Energy-optimized structure of antifreeze protein and its binding mechanism. , 1992, Journal of molecular biology.