Epigenetics in Alternative Pre-mRNA Splicing

[1]  胸部誘導に於けるT波増高例について(予報) : 第7回日本循環器学会中国・四国地方学会総会 , 1962 .

[2]  R. Tjian,et al.  Transcription of herpes simplex virus tk sequences under the control of wild-type and mutant human RNA polymerase I promoters , 1985, Molecular and cellular biology.

[3]  D. Cleveland,et al.  Specificity of RNA maturation pathways: RNAs transcribed by RNA polymerase III are not substrates for splicing or polyadenylation , 1987, Molecular and cellular biology.

[4]  M. Aebi,et al.  Precision and orderliness in splicing , 1987 .

[5]  I. Graham,et al.  Effects of RNA secondary structure on alternative splicing of Pre-mRNA: Is folding limited to a region behind the transcribing RNA polymerase? , 1988, Cell.

[6]  Y. Osheim,et al.  Splice site selection, rate of splicing, and alternative splicing on nascent transcripts. , 1988, Genes & development.

[7]  C. Thummel,et al.  Splicing precedes polyadenylation during Drosophila E74A transcription , 1990, Molecular and cellular biology.

[8]  AC Tose.  Cell , 1993, Cell.

[9]  L. Chasin,et al.  Order of intron removal during splicing of endogenous adenine phosphoribosyltransferase and dihydrofolate reductase pre-mRNA , 1993, Molecular and cellular biology.

[10]  L. Wieslander,et al.  Splicing of Balbiani ring 1 gene pre-mRNA occurs simultaneously with transcription , 1994, Cell.

[11]  A. Krainer,et al.  Disruption of pre-mRNA splicing in vivo results in reorganization of splicing factors , 1994, The Journal of cell biology.

[12]  H. Klamut,et al.  The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced , 1995, Nature Genetics.

[13]  P Cramer,et al.  Functional association between promoter structure and transcript alternative splicing. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[14]  M. Wickens,et al.  The C-terminal domain of RNA polymerase II couples mRNA processing to transcription , 1997, Nature.

[15]  D. Bentley,et al.  5'-Capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II. , 1997, Genes & development.

[16]  G. C. Roberts,et al.  Co-transcriptional commitment to alternative splice site selection. , 1998, Nucleic acids research.

[17]  J. Manley,et al.  RNA polymerase II is an essential mRNA polyadenylation factor , 1998, Nature.

[18]  B R Franza,et al.  Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors. , 1998, RNA.

[19]  K. O'hare,et al.  Role of RNA polymerase II carboxy-terminal domain in coordinating transcription with RNA processing. , 1998, Cold Spring Harbor symposia on quantitative biology.

[20]  A. Kornblihtt,et al.  Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer. , 1999, Molecular cell.

[21]  T. Misteli,et al.  RNA polymerase II targets pre-mRNA splicing factors to transcription sites in vivo. , 1999, Molecular cell.

[22]  Kevin Burrage,et al.  ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome , 2000, Nature Genetics.

[23]  A. Kornblihtt,et al.  Antagonistic effects of T‐Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing , 2001, The EMBO journal.

[24]  B. Chait,et al.  Human STAGA Complex Is a Chromatin-Acetylating Transcription Coactivator That Interacts with Pre-mRNA Splicing and DNA Damage-Binding Factors In Vivo , 2001, Molecular and Cellular Biology.

[25]  Qiang Zhou,et al.  Stimulatory effect of splicing factors on transcriptional elongation , 2001, Nature.

[26]  A. Kornblihtt,et al.  Transcriptional Activators Differ in Their Abilities to Control Alternative Splicing* , 2002, The Journal of Biological Chemistry.

[27]  M. Rosbash,et al.  T7 RNA polymerase-directed transcripts are processed in yeast and link 3' end formation to mRNA nuclear export. , 2002, RNA.

[28]  Bert W O'Malley,et al.  Coordinate Regulation of Transcription and Splicing by Steroid Receptor Coregulators , 2002, Science.

[29]  A. Kornblihtt,et al.  Alternative splicing: multiple control mechanisms and involvement in human disease. , 2002, Trends in genetics : TIG.

[30]  T. Maniatis,et al.  An extensive network of coupling among gene expression machines , 2002, Nature.

[31]  M. Ares,et al.  Perturbation of transcription elongation influences the fidelity of internal exon inclusion in Saccharomyces cerevisiae. , 2003, RNA.

[32]  D. Lockshon,et al.  Cotranscriptional Recruitment of the U1 snRNP to Intron-Containing Genes in Yeast , 2003, Molecular and Cellular Biology.

[33]  C. Attanasio,et al.  Outcome of donor splice site mutations accounting for congenital afibrinogenemia reflects order of intron removal in the fibrinogen alpha gene (FGA). , 2003, Blood.

[34]  Christoph H Borchers,et al.  Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. , 2003, Genes & development.

[35]  A. Kornblihtt,et al.  A slow RNA polymerase II affects alternative splicing in vivo. , 2003, Molecular cell.

[36]  A. Kornblihtt,et al.  Promoter Architecture Modulates CFTR Exon 9 Skipping* , 2003, The Journal of Biological Chemistry.

[37]  B. O’Malley,et al.  CoAA, a Nuclear Receptor Coactivator Protein at the Interface of Transcriptional Coactivation and RNA Splicing , 2004, Molecular and Cellular Biology.

[38]  E. Buratti,et al.  Influence of RNA Secondary Structure on the Pre-mRNA Splicing Process , 2004, Molecular and Cellular Biology.

[39]  D. Bentley,et al.  RNA Polymerase II Carboxy-Terminal Domain Phosphorylation Is Required for Cotranscriptional Pre-mRNA Splicing and 3′-End Formation , 2004, Molecular and Cellular Biology.

[40]  B. O’Malley,et al.  Differential recruitment of nuclear receptor coactivators may determine alternative RNA splice site choice in target genes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[41]  K. Neugebauer,et al.  Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. , 2005, Molecular cell.

[42]  John R. Yates,et al.  Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation , 2005, Nature.

[43]  Clifford A. Meyer,et al.  Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells , 2005, Genome Biology.

[44]  S. Lacadie,et al.  Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast. , 2005, Molecular cell.

[45]  Maho Takahashi,et al.  Coactivator-associated Arginine Methyltransferase 1, CARM1, Affects Pre-mRNA Splicing in an Isoform-specific Manner*♦ , 2005, Journal of Biological Chemistry.

[46]  A. Kornblihtt,et al.  Promoter usage and alternative splicing. , 2005, Current opinion in cell biology.

[47]  Tyson A. Clark,et al.  Nova regulates brain-specific splicing to shape the synapse , 2005, Nature Genetics.

[48]  M. Yaniv,et al.  The human SWI/SNF subunit Brm is a regulator of alternative splicing , 2006, Nature Structural &Molecular Biology.

[49]  K. Neugebauer,et al.  Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells , 2006, Nature Structural &Molecular Biology.

[50]  S. Stamm,et al.  The snoRNA HBII-52 Regulates Alternative Splicing of the Serotonin Receptor 2C , 2006, Science.

[51]  K. J. Hertel,et al.  Linking Splicing to Pol II Transcription Stabilizes Pre-mRNAs and Influences Splicing Patterns , 2006, PLoS biology.

[52]  Daniel F Tardiff,et al.  A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional. , 2006, Molecular cell.

[53]  A. Kornblihtt,et al.  RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20 , 2006, Nature Structural &Molecular Biology.

[54]  R. Reed,et al.  Functional coupling of RNAP II transcription to spliceosome assembly. , 2006, Genes & development.

[55]  J. Manley,et al.  Concurrent splicing and transcription are not sufficient to enhance splicing efficiency. , 2007, RNA.

[56]  J. Côté,et al.  The arginine methyltransferase CARM1 regulates the coupling of transcription and mRNA processing. , 2007, Molecular cell.

[57]  Paul Tempst,et al.  Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. , 2007, Molecular cell.

[58]  E. Wagner,et al.  A genome-wide RNA interference screen reveals that variant histones are necessary for replication-dependent histone pre-mRNA processing. , 2007, Molecular cell.

[59]  A. Krainer,et al.  SR proteins function in coupling RNAP II transcription to pre-mRNA splicing. , 2007, Molecular cell.

[60]  L. Chasin,et al.  Searching for splicing motifs. , 2007, Advances in experimental medicine and biology.

[61]  Bryan J Venters,et al.  A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. , 2008, Genome research.

[62]  Eric T. Wang,et al.  Alternative Isoform Regulation in Human Tissue Transcriptomes , 2008, Nature.

[63]  Thomas Girke,et al.  Deciphering the Ubiquitin-Mediated Pathway in Apicomplexan Parasites: A Potential Strategy to Interfere with Parasite Virulence , 2008, PloS one.

[64]  E. Wagner,et al.  Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail , 2008, Nature Reviews Genetics.

[65]  T. Mikkelsen,et al.  Genome-scale DNA methylation maps of pluripotent and differentiated cells , 2008, Nature.

[66]  B. Frey,et al.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing , 2008, Nature Genetics.

[67]  Xiang-Dong Fu,et al.  The splicing factor SC35 has an active role in transcriptional elongation , 2008, Nature Structural &Molecular Biology.

[68]  Kristi L Fox-Walsh,et al.  Splice-site pairing is an intrinsically high fidelity process , 2009, Proceedings of the National Academy of Sciences.

[69]  A. Kornblihtt,et al.  DNA Damage Regulates Alternative Splicing through Inhibition of RNA Polymerase II Elongation , 2009, Cell.

[70]  G. Ast,et al.  Chromatin organization marks exon-intron structure , 2009, Nature Structural &Molecular Biology.

[71]  D. Black,et al.  Co-transcriptional splicing of constitutive and alternative exons. , 2009, RNA.

[72]  Jan Komorowski,et al.  Nucleosomes are well positioned in exons and carry characteristic histone modifications. , 2009, Genome research.

[73]  M. Alló,et al.  Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing , 2009, Proceedings of the National Academy of Sciences.

[74]  Noah Spies,et al.  Biased chromatin signatures around polyadenylation sites and exons. , 2009, Molecular cell.

[75]  Ming Zhou,et al.  Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs , 2009, Nature.

[76]  R. Loomis,et al.  Chromatin binding of SRp20 and ASF/SF2 and dissociation from mitotic chromosomes is modulated by histone H3 serine 10 phosphorylation. , 2009, Molecular cell.

[77]  Tracy L. Johnson,et al.  Acetylation by the Transcriptional Coactivator Gcn5 Plays a Novel Role in Co-Transcriptional Spliceosome Assembly , 2009, PLoS genetics.

[78]  Melissa J. Moore,et al.  Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation , 2009, Cell.

[79]  Michael Q. Zhang,et al.  Capture and Single Molecule Bisulfite Sequencing High Definition Profiling of Mammalian Dna Methylation by Array Material Supplemental Open Access , 2022 .

[80]  The Gcn5 Bromodomain of the SAGA Complex Facilitates Cooperative and Cross-tail Acetylation of Nucleosomes* , 2009, Journal of Biological Chemistry.

[81]  J. Cáceres,et al.  The SR protein family of splicing factors: master regulators of gene expression. , 2009, The Biochemical journal.

[82]  I. Poser,et al.  SR protein family members display diverse activities in the formation of nascent and mature mRNPs in vivo. , 2009, Molecular cell.

[83]  Carlos Bustamante,et al.  Nucleosomal Fluctuations Govern the Transcription Dynamics of RNA Polymerase II , 2009, Science.

[84]  J. Mattick,et al.  Nucleosomes are preferentially positioned at exons in somatic and sperm cells , 2009, Cell cycle.

[85]  N. Visa,et al.  SWI/SNF Associates with Nascent Pre-mRNPs and Regulates Alternative Pre-mRNA Processing , 2009, PLoS genetics.

[86]  J. Ahringer,et al.  Differential chromatin marking of introns and expressed exons by H3K36me3 , 2008, Nature Genetics.

[87]  Manuel de la Mata,et al.  Control of alternative splicing through siRNA-mediated transcriptional gene silencing , 2009, Nature Structural &Molecular Biology.

[88]  Christoforos Nikolaou,et al.  Nucleosome positioning as a determinant of exon recognition , 2009, Nature Structural &Molecular Biology.

[89]  Lili Wan,et al.  RNA and Disease , 2009, Cell.

[90]  Laura Fanti,et al.  Heterochromatin Protein 1 (HP1a) Positively Regulates Euchromatic Gene Expression through RNA Transcript Association and Interaction with hnRNPs in Drosophila , 2009, PLoS genetics.

[91]  Brendan J. Frey,et al.  Deciphering the splicing code , 2010, Nature.

[92]  B. Blencowe,et al.  Regulation of Alternative Splicing by Histone Modifications , 2010, Science.

[93]  Ross Smith,et al.  Functional diversity of the hnRNPs: past, present and perspectives. , 2010, The Biochemical journal.

[94]  M. Pellegrini,et al.  Relationship between nucleosome positioning and DNA methylation , 2010, Nature.

[95]  Peter Saffrey,et al.  Complex Exon-Intron Marking by Histone Modifications Is Not Determined Solely by Nucleosome Distribution , 2010, PloS one.

[96]  A. Kornblihtt,et al.  First come, first served revisited: factors affecting the same alternative splicing event have different effects on the relative rates of intron removal. , 2010, RNA.

[97]  S. Stamm,et al.  Regulation of alternative splicing by short non-coding nuclear RNAs , 2010, RNA biology.